Wall clock time and date at job start Mon Mar 30 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86797 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47065 * 239.99769 * 3 2 1 5 5 H 1.48495 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 120.00041 * 3 2 1 7 7 C 1.40069 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.39915 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.38279 * 125.41180 * 179.97438 * 9 7 2 11 11 C 1.36806 * 114.20390 * 179.76612 * 10 9 7 12 12 C 1.34539 * 115.33801 * 0.50069 * 11 10 9 13 13 C 1.50703 * 124.92394 * 179.78587 * 12 11 10 14 14 C 1.53174 * 109.61531 * 119.94406 * 13 12 11 15 15 C 1.53095 * 109.16381 * 176.89028 * 14 13 12 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 13 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 S 1.75794 * 110.14539 * 359.52039 * 12 11 10 20 20 H 0.96994 * 119.99847 * 0.02562 * 1 2 3 21 21 H 1.08002 * 122.89926 * 0.02562 * 10 9 7 22 22 H 1.07996 * 122.33455 * 180.31217 * 11 10 9 23 23 H 1.09002 * 109.54537 * 359.72056 * 13 12 11 24 24 H 1.09004 * 109.52433 * 296.79531 * 14 13 12 25 25 H 1.08999 * 109.52728 * 56.98466 * 14 13 12 26 26 H 1.08998 * 109.48473 * 182.41141 * 15 14 13 27 27 H 1.08997 * 109.48189 * 62.37446 * 15 14 13 28 28 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 29 29 H 1.09005 * 109.47939 * 58.82140 * 17 16 15 30 30 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 31 31 H 1.08994 * 109.58000 * 177.54525 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0091 -1.2130 0.0005 8 1 3.0891 -1.2131 0.0001 9 6 1.3096 -2.4247 0.0005 10 6 1.8849 -3.6821 0.0005 11 6 0.9837 -4.7114 0.0056 12 6 -0.3104 -4.3435 -0.0008 13 6 -1.4782 -5.2962 -0.0017 14 6 -2.3367 -5.0584 1.2443 15 6 -3.5606 -5.9768 1.1941 16 8 -4.2943 -5.7252 -0.0062 17 6 -3.5569 -5.9763 -1.2042 18 6 -2.3328 -5.0579 -1.2503 19 16 -0.4416 -2.5905 -0.0004 20 1 -0.4849 0.8400 -0.0004 21 1 2.9536 -3.8382 0.0009 22 1 1.2897 -5.7471 0.0112 23 1 -1.1114 -6.3226 -0.0013 24 1 -1.7519 -5.2793 2.1373 25 1 -2.6625 -4.0185 1.2693 26 1 -4.1973 -5.7815 2.0570 27 1 -3.2354 -7.0170 1.2102 28 1 -4.1908 -5.7807 -2.0690 29 1 -3.2315 -7.0165 -1.2195 30 1 -2.6585 -4.0180 -1.2758 31 1 -1.7449 -5.2774 -2.1415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215393458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:12 Heat of formation + Delta-G solvation = -55.273267 kcal Electronic energy + Delta-G solvation = -14637.547602 eV Core-core repulsion = 12201.868019 eV Total energy + Delta-G solvation = -2435.679583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91816 -35.94722 -34.28639 -32.92465 -30.70191 -28.82089 -25.90588 -23.24935 -23.07857 -21.34755 -19.68165 -18.20001 -17.33216 -15.87766 -15.66619 -15.10873 -14.52374 -14.17954 -13.94326 -13.37476 -12.99337 -12.43731 -12.08977 -12.02073 -11.66607 -11.18992 -11.04818 -11.02872 -10.86627 -10.75236 -10.32959 -10.21587 -9.80949 -9.71469 -9.41298 -9.10564 -8.77392 -7.27574 -6.94021 -6.63530 -4.45777 2.64614 2.94508 2.98156 3.12601 3.67285 3.74429 4.15825 4.16351 4.19368 5.08536 5.29950 5.33207 5.43403 5.46411 5.62461 5.72516 5.91716 5.99559 6.21577 6.40787 6.47492 6.59795 6.76291 6.84900 6.88798 6.96554 7.31628 7.47785 7.64875 7.85390 8.12403 8.22077 8.61178 8.63811 9.89550 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.043829 B = 0.006615 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.691371 B = 4231.542131 C = 4541.914975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.052 3.948 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.393 4.393 8 H 0.091 0.909 9 C 0.035 3.965 10 C -0.358 4.358 11 C -0.066 4.066 12 C -0.377 4.377 13 C 0.017 3.983 14 C -0.147 4.147 15 C 0.061 3.939 16 O -0.388 6.388 17 C 0.061 3.939 18 C -0.147 4.147 19 S 0.137 5.863 20 H 0.295 0.705 21 H 0.096 0.904 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -4.404 -0.002 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.429 4.429 8 H 0.109 0.891 9 C -0.086 4.086 10 C -0.383 4.383 11 C -0.096 4.096 12 C -0.493 4.493 13 C -0.003 4.003 14 C -0.185 4.185 15 C -0.015 4.015 16 O -0.307 6.307 17 C -0.015 4.015 18 C -0.185 4.185 19 S 0.397 5.603 20 H 0.108 0.892 21 H 0.114 0.886 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.144 -3.268 -0.002 6.959 hybrid contribution 2.087 -0.425 0.005 2.130 sum -4.057 -3.693 0.003 5.486 Atomic orbital electron populations 1.68854 1.07516 1.30473 1.34571 1.26171 0.95090 1.02434 0.93128 0.85910 0.79667 0.78607 0.80140 1.18672 1.19938 1.18667 1.19112 0.95209 0.88909 1.39675 0.89140 1.21851 0.95081 0.95676 0.95948 1.19689 0.97673 0.91359 1.29599 1.19207 0.92277 0.97083 1.00991 1.24193 0.95806 1.00600 1.28676 1.19115 0.91980 0.96460 0.92745 1.22304 0.96048 1.00800 0.99338 1.22614 0.93909 0.97768 0.87239 1.87864 1.39684 1.89197 1.13997 1.22611 0.93855 0.97769 0.87292 1.22303 0.96055 1.00801 0.99328 1.84383 1.05297 0.94975 1.75657 0.89187 0.88597 0.89559 0.92553 0.91291 0.90931 0.89511 0.93828 0.89510 0.93831 0.90939 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 10.65 55.56 0.59 -18.90 16 2 C 0.05 1.25 5.50 -17.27 -0.09 1.15 16 3 Si 0.93 18.02 29.56 -169.99 -5.03 12.99 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.39 -10.31 9.29 -38.27 -0.36 -10.67 16 8 H 0.09 2.25 7.85 -52.49 -0.41 1.84 16 9 C 0.03 0.95 6.19 -38.94 -0.24 0.70 16 10 C -0.36 -9.37 10.20 -40.08 -0.41 -9.78 16 11 C -0.07 -1.60 9.97 -41.41 -0.41 -2.01 16 12 C -0.38 -8.74 5.14 -35.61 -0.18 -8.92 16 13 C 0.02 0.33 2.64 -91.59 -0.24 0.09 16 14 C -0.15 -2.57 5.36 -26.59 -0.14 -2.71 16 15 C 0.06 0.91 6.84 37.21 0.25 1.16 16 16 O -0.39 -6.34 10.77 -35.23 -0.38 -6.72 16 17 C 0.06 0.91 6.84 37.21 0.25 1.16 16 18 C -0.15 -2.57 5.36 -26.59 -0.14 -2.71 16 19 S 0.14 3.47 19.61 -107.50 -2.11 1.36 16 20 H 0.30 6.63 8.30 -40.82 -0.34 6.29 16 21 H 0.10 2.41 8.06 -52.49 -0.42 1.98 16 22 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 23 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.39 7.89 -51.93 -0.41 0.98 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -27.54 270.22 -8.73 -36.27 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.17 Total: 3.46 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -1.71 Total: -32.54 kcal Atomic # 7 Polarization: -19.49 SS G_CDS: 0.59 Total: -18.90 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.38 Total: -6.72 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.11 Total: 1.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.54 -8.73 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.001 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds