Wall clock time and date at job start Mon Mar 30 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86797 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47065 * 239.99769 * 3 2 1 5 5 H 1.48495 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 120.00041 * 3 2 1 7 7 C 1.40069 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.39915 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.38279 * 125.41180 * 179.97438 * 9 7 2 11 11 C 1.36806 * 114.20390 * 179.76612 * 10 9 7 12 12 C 1.34539 * 115.33801 * 0.50069 * 11 10 9 13 13 C 1.50703 * 124.92394 * 179.78587 * 12 11 10 14 14 C 1.53174 * 109.61531 * 119.94406 * 13 12 11 15 15 C 1.53095 * 109.16381 * 176.89028 * 14 13 12 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 13 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 S 1.75794 * 110.14539 * 359.52039 * 12 11 10 20 20 H 0.96994 * 119.99847 * 0.02562 * 1 2 3 21 21 H 1.08002 * 122.89926 * 0.02562 * 10 9 7 22 22 H 1.07996 * 122.33455 * 180.31217 * 11 10 9 23 23 H 1.09002 * 109.54537 * 359.72056 * 13 12 11 24 24 H 1.09004 * 109.52433 * 296.79531 * 14 13 12 25 25 H 1.08999 * 109.52728 * 56.98466 * 14 13 12 26 26 H 1.08998 * 109.48473 * 182.41141 * 15 14 13 27 27 H 1.08997 * 109.48189 * 62.37446 * 15 14 13 28 28 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 29 29 H 1.09005 * 109.47939 * 58.82140 * 17 16 15 30 30 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 31 31 H 1.08994 * 109.58000 * 177.54525 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0091 -1.2130 0.0005 8 1 3.0891 -1.2131 0.0001 9 6 1.3096 -2.4247 0.0005 10 6 1.8849 -3.6821 0.0005 11 6 0.9837 -4.7114 0.0056 12 6 -0.3104 -4.3435 -0.0008 13 6 -1.4782 -5.2962 -0.0017 14 6 -2.3367 -5.0584 1.2443 15 6 -3.5606 -5.9768 1.1941 16 8 -4.2943 -5.7252 -0.0062 17 6 -3.5569 -5.9763 -1.2042 18 6 -2.3328 -5.0579 -1.2503 19 16 -0.4416 -2.5905 -0.0004 20 1 -0.4849 0.8400 -0.0004 21 1 2.9536 -3.8382 0.0009 22 1 1.2897 -5.7471 0.0112 23 1 -1.1114 -6.3226 -0.0013 24 1 -1.7519 -5.2793 2.1373 25 1 -2.6625 -4.0185 1.2693 26 1 -4.1973 -5.7815 2.0570 27 1 -3.2354 -7.0170 1.2102 28 1 -4.1908 -5.7807 -2.0690 29 1 -3.2315 -7.0165 -1.2195 30 1 -2.6585 -4.0180 -1.2758 31 1 -1.7449 -5.2774 -2.1415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215393458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:12 Heat of formation + Delta-G solvation = -70.039899 kcal Electronic energy + Delta-G solvation = -14638.187931 eV Core-core repulsion = 12201.868019 eV Total energy + Delta-G solvation = -2436.319912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22140 -37.79762 -36.04514 -34.54560 -31.96195 -30.68827 -27.57013 -24.92423 -24.36753 -23.14664 -21.17264 -20.04579 -19.22199 -17.32671 -16.86819 -16.77832 -16.15523 -15.60605 -15.56107 -14.74051 -14.63342 -14.16245 -13.79569 -13.59646 -13.20317 -12.99172 -12.68800 -12.67531 -12.33406 -12.19456 -11.94632 -11.66889 -11.59834 -11.16678 -11.14517 -10.72674 -10.41083 -9.22033 -8.77678 -8.64310 -6.42737 0.81491 1.35537 1.50477 1.51403 1.71688 2.07916 2.27496 2.27972 3.01751 3.12483 3.94331 4.05201 4.08563 4.16102 4.38527 4.51069 4.66047 4.79247 4.80909 4.82337 5.00702 5.01197 5.12552 5.14804 5.33844 5.34207 5.48900 5.69685 5.92055 6.17653 6.28803 6.30243 6.66601 6.68252 8.08118 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.043829 B = 0.006615 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.691371 B = 4231.542131 C = 4541.914975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.014 3.986 3 Si 1.008 2.992 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.429 4.429 8 H 0.092 0.908 9 C -0.001 4.001 10 C -0.384 4.384 11 C -0.085 4.085 12 C -0.361 4.361 13 C 0.012 3.988 14 C -0.144 4.144 15 C 0.065 3.935 16 O -0.402 6.402 17 C 0.065 3.935 18 C -0.144 4.144 19 S 0.117 5.883 20 H 0.305 0.695 21 H 0.094 0.906 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -4.805 -0.001 7.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.204 4.204 3 Si 0.827 3.173 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.464 4.464 8 H 0.110 0.890 9 C -0.121 4.121 10 C -0.409 4.409 11 C -0.113 4.113 12 C -0.477 4.477 13 C -0.008 4.008 14 C -0.182 4.182 15 C -0.011 4.011 16 O -0.322 6.322 17 C -0.011 4.011 18 C -0.182 4.182 19 S 0.376 5.624 20 H 0.118 0.882 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.989 -3.689 -0.001 7.903 hybrid contribution 2.312 -0.354 0.004 2.338 sum -4.677 -4.043 0.003 6.182 Atomic orbital electron populations 1.68915 1.08875 1.32009 1.33950 1.27150 0.95918 1.05567 0.91719 0.84814 0.78397 0.73804 0.80283 1.18132 1.18407 1.18122 1.19440 0.95614 0.89919 1.41396 0.89038 1.22268 0.96186 0.96610 0.97073 1.19908 0.98072 0.91936 1.31029 1.19432 0.92433 0.97831 1.01649 1.24698 0.97074 1.00070 1.25855 1.19282 0.91027 0.96038 0.94475 1.22246 0.97231 1.00270 0.98463 1.22688 0.92778 0.98070 0.87557 1.87860 1.40189 1.89412 1.14700 1.22685 0.92716 0.98070 0.87616 1.22244 0.97243 1.00270 0.98447 1.84285 1.04694 0.97206 1.76255 0.88178 0.88776 0.87306 0.90873 0.91211 0.93358 0.87507 0.91546 0.87508 0.91550 0.93366 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.55 10.65 21.86 0.23 -40.32 16 2 C 0.01 0.66 5.50 85.28 0.47 1.13 16 3 Si 1.01 36.43 29.56 68.60 2.03 38.46 16 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 7 C -0.43 -23.10 9.29 23.12 0.21 -22.89 16 8 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 9 C 0.00 -0.08 6.19 22.69 0.14 0.06 16 10 C -0.38 -20.71 10.20 21.94 0.22 -20.48 16 11 C -0.08 -4.12 9.97 21.09 0.21 -3.91 16 12 C -0.36 -16.77 5.14 24.84 0.13 -16.64 16 13 C 0.01 0.44 2.64 -11.42 -0.03 0.41 16 14 C -0.14 -4.84 5.36 30.68 0.16 -4.68 16 15 C 0.07 1.74 6.84 72.01 0.49 2.23 16 16 O -0.40 -11.97 10.77 -148.98 -1.60 -13.57 16 17 C 0.07 1.74 6.84 72.01 0.49 2.23 16 18 C -0.14 -4.84 5.36 30.69 0.16 -4.68 16 19 S 0.12 6.03 19.61 -56.49 -1.11 4.92 16 20 H 0.31 13.65 8.30 -92.71 -0.77 12.88 16 21 H 0.09 4.91 8.06 -2.91 -0.02 4.89 16 22 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 23 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 1.84 7.89 -2.39 -0.02 1.82 16 26 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.05 1.84 7.89 -2.39 -0.02 1.82 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -60.18 270.22 3.33 -56.85 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.11 Total: 20.87 kcal Atomic # 6 Polarization: -69.89 SS G_CDS: 2.67 Total: -67.22 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.23 Total: -40.32 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -1.60 Total: -13.57 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.11 Total: 4.92 kcal Total: -60.18 3.33 -56.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.186 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds