Wall clock time and date at job start Mon Mar 30 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.68186 * 2 1 4 4 C 1.54709 * 110.92003 * 236.63369 * 2 1 3 5 5 C 1.51705 * 101.89212 * 216.44712 * 4 2 1 6 6 C 1.37956 * 132.04406 * 195.73819 * 5 4 2 7 7 C 1.38992 * 120.52785 * 179.10304 * 6 5 4 8 8 Cl 1.73598 * 119.97229 * 179.97438 * 7 6 5 9 9 C 1.37618 * 120.06096 * 359.90403 * 7 6 5 10 10 C 1.40512 * 120.05821 * 0.11834 * 9 7 6 11 11 C 1.41152 * 120.14352 * 180.26710 * 10 9 7 12 12 H 1.08001 * 120.00130 * 204.72094 * 11 10 9 13 13 C 1.39934 * 119.99855 * 24.72000 * 11 10 9 14 14 N 1.30856 * 119.99864 * 17.89202 * 13 11 10 15 15 Si 1.86799 * 119.99773 * 197.89534 * 13 11 10 16 16 H 1.48494 * 109.47473 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47046 * 119.99954 * 15 13 11 18 18 H 1.48500 * 109.47256 * 239.99557 * 15 13 11 19 19 C 1.38528 * 107.01435 * 15.24524 * 5 4 2 20 20 O 1.35851 * 111.39402 * 1.24573 * 19 5 4 21 21 H 1.09003 * 109.46685 * 300.70182 * 1 2 3 22 22 H 1.08996 * 109.47302 * 60.69913 * 1 2 3 23 23 H 1.08993 * 109.47198 * 180.70508 * 1 2 3 24 24 H 1.09004 * 110.94927 * 334.59354 * 4 2 1 25 25 H 1.08994 * 110.94735 * 98.30049 * 4 2 1 26 26 H 1.08009 * 119.73620 * 359.10838 * 6 5 4 27 27 H 1.07997 * 119.97057 * 180.13864 * 9 7 6 28 28 H 0.97008 * 119.99697 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0825 -0.7948 -1.2069 5 6 3.3095 -1.4574 -0.6096 6 6 4.4028 -2.0689 -1.1875 7 6 5.4196 -2.5910 -0.3967 8 17 6.7886 -3.3580 -1.1391 9 6 5.3429 -2.4992 0.9742 10 6 4.2352 -1.8797 1.5772 11 6 4.1573 -1.7795 2.9830 12 1 3.1954 -1.6874 3.4654 13 6 5.3264 -1.7996 3.7517 14 7 6.4833 -1.5595 3.1894 15 14 5.2355 -2.1691 5.5805 16 1 3.8214 -2.4032 5.9686 17 1 6.0389 -3.3813 5.8811 18 1 5.7740 -1.0161 6.3459 19 6 3.1954 -1.3557 0.7672 20 8 2.0397 -0.7373 1.1243 21 1 -0.3633 0.5247 0.8837 22 1 -0.3634 0.5029 -0.8961 23 1 -0.3633 -1.0275 0.0126 24 1 1.3627 -1.5404 -1.5450 25 1 2.3589 -0.1249 -2.0210 26 1 4.4693 -2.1424 -2.2631 27 1 6.1348 -2.9034 1.5872 28 1 7.2939 -1.5737 3.7222 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215405539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:34 Heat of formation + Delta-G solvation = -46.923635 kcal Electronic energy + Delta-G solvation = -14548.506970 eV Core-core repulsion = 11975.312654 eV Total energy + Delta-G solvation = -2573.194317 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.58088 -38.39648 -37.00064 -35.53609 -33.64066 -31.63303 -30.90845 -27.39149 -26.97037 -22.85728 -22.37122 -22.22674 -19.04166 -18.12399 -17.62005 -16.91070 -16.28273 -15.96761 -14.84062 -14.71085 -14.23010 -14.02706 -13.69174 -13.57424 -13.31985 -13.15701 -12.92204 -12.81037 -12.43692 -12.20279 -12.10842 -11.89452 -11.82985 -11.27402 -11.19884 -10.93150 -9.48861 -8.84256 -8.61376 -6.35036 0.71755 0.79938 1.37139 1.44008 1.47613 1.52993 2.19489 2.55558 2.77283 3.45883 3.73900 3.86000 4.16841 4.34915 4.46756 4.67891 4.77025 4.83202 4.93610 4.99482 5.13541 5.20577 5.30460 5.34412 5.58314 5.74014 5.80773 6.09002 6.23476 6.58056 6.79415 6.92779 8.26949 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.011634 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.046011 B = 2406.235035 C = 4002.327140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 H 0.076 0.924 4 C -0.089 4.089 5 C -0.148 4.148 6 C -0.187 4.187 7 C -0.030 4.030 8 Cl -0.094 7.094 9 C -0.161 4.161 10 C 0.082 3.918 11 C -0.485 4.485 12 H 0.071 0.929 13 C 0.037 3.963 14 N -0.819 5.819 15 Si 0.983 3.017 16 H -0.261 1.261 17 H -0.260 1.260 18 H -0.263 1.263 19 C -0.023 4.023 20 O -0.328 6.328 21 H 0.064 0.936 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 1.269 -5.103 7.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.150 4.150 6 C -0.207 4.207 7 C -0.057 4.057 8 Cl -0.065 7.065 9 C -0.181 4.181 10 C 0.079 3.921 11 C -0.514 4.514 12 H 0.090 0.910 13 C -0.179 4.179 14 N -0.445 5.445 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.184 1.184 18 H -0.188 1.188 19 C -0.068 4.068 20 O -0.244 6.244 21 H 0.083 0.917 22 H 0.124 0.876 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.277 1.247 -4.919 7.322 hybrid contribution 0.571 -0.172 0.668 0.895 sum -4.707 1.076 -4.251 6.433 Atomic orbital electron populations 1.21835 0.90141 1.03258 1.04062 1.23574 0.97076 0.95031 0.83620 0.90638 1.21805 0.93422 0.99163 0.98163 1.20707 0.97496 1.03360 0.93389 1.19622 0.94269 1.08017 0.98783 1.20607 0.90120 1.02237 0.92709 1.98246 1.44707 1.80693 1.82851 1.20810 1.00934 1.04579 0.91820 1.17176 0.89125 0.92075 0.93749 1.19624 0.94358 1.45863 0.91583 0.91041 1.26737 0.93840 0.91267 1.06044 1.69859 1.00223 1.33801 1.40630 0.85151 0.79686 0.79195 0.75684 1.18486 1.18413 1.18758 1.19945 0.90486 1.03311 0.93060 1.86632 1.35154 1.63740 1.38884 0.91655 0.87554 0.92092 0.88387 0.87753 0.85292 0.86197 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.60 71.98 0.69 -2.57 15 2 C 0.06 2.10 4.25 31.18 0.13 2.23 15 3 H 0.08 2.41 8.14 -2.39 -0.02 2.40 15 4 C -0.09 -2.84 6.66 30.75 0.20 -2.63 15 5 C -0.15 -6.47 6.27 -19.54 -0.12 -6.59 15 6 C -0.19 -8.12 9.82 22.38 0.22 -7.90 15 7 C -0.03 -1.42 6.32 22.30 0.14 -1.28 15 8 Cl -0.09 -3.75 28.95 -2.72 -0.08 -3.83 15 9 C -0.16 -8.60 8.43 22.68 0.19 -8.41 15 10 C 0.08 4.56 5.59 -21.12 -0.12 4.44 15 11 C -0.49 -27.15 9.01 23.40 0.21 -26.94 15 12 H 0.07 4.02 7.91 -2.91 -0.02 4.00 15 13 C 0.04 1.87 5.13 85.25 0.44 2.31 15 14 N -0.82 -43.11 10.97 21.83 0.24 -42.87 15 15 Si 0.98 38.92 29.60 68.60 2.03 40.95 15 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 19 C -0.02 -1.18 6.81 23.23 0.16 -1.02 15 20 O -0.33 -15.29 10.75 -91.88 -0.99 -16.28 15 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.10 2.75 7.93 -2.38 -0.02 2.73 15 25 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.13 4.79 8.06 -2.91 -0.02 4.77 15 27 H 0.12 6.68 6.16 -2.91 -0.02 6.66 15 28 H 0.29 13.76 8.30 -92.70 -0.77 12.99 15 Total: -1.00 -61.74 258.53 4.52 -57.22 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.17 Total: 13.16 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 2.15 Total: -48.36 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.99 Total: -16.28 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -0.08 Total: -3.83 kcal Total: -61.74 4.52 -57.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215405539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.296 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds