Wall clock time and date at job start Mon Mar 30 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48504 * 109.47131 * 269.99951 * 3 2 1 5 5 H 1.48498 * 109.47645 * 29.99744 * 3 2 1 6 6 H 1.48503 * 109.47157 * 150.00122 * 3 2 1 7 7 C 1.37878 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99998 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.38385 * 120.11217 * 89.99592 * 10 9 7 12 12 C 1.37729 * 120.00066 * 179.97438 * 11 10 9 13 13 C 1.38877 * 120.79322 * 0.34347 * 12 11 10 14 14 C 1.39345 * 118.87673 * 359.51736 * 13 12 11 15 15 Cl 1.73593 * 119.89440 * 180.28192 * 14 13 12 16 16 C 1.38066 * 120.21546 * 0.28817 * 14 13 12 17 17 O 1.36415 * 111.31889 * 179.08076 * 13 12 11 18 18 C 1.43772 * 109.09433 * 18.73773 * 17 13 12 19 19 C 1.51649 * 132.16696 * 180.33511 * 12 11 10 20 20 H 0.97006 * 120.00143 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47160 * 59.99723 * 9 7 2 22 22 H 1.09000 * 109.46492 * 299.99585 * 9 7 2 23 23 H 1.07998 * 119.99999 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.83304 * 180.02562 * 16 14 13 25 25 H 1.09002 * 110.74862 * 214.09183 * 18 17 13 26 26 H 1.08999 * 110.74936 * 90.92637 * 18 17 13 27 27 H 1.09004 * 110.93303 * 46.46028 * 19 12 11 28 28 H 1.08992 * 110.97129 * 282.79834 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0023 11 6 4.2455 -3.2704 -1.1943 12 6 4.7050 -4.5687 -1.1906 13 6 4.9346 -5.2382 0.0043 14 6 4.7018 -4.5708 1.2051 15 17 4.9870 -5.3800 2.7142 16 6 4.2449 -3.2679 1.1987 17 8 5.3657 -6.5135 -0.2166 18 6 5.8581 -6.6168 -1.5634 19 6 5.0517 -5.5291 -2.3118 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8751 -0.6806 -0.8889 23 1 4.0668 -2.7635 -2.1311 24 1 4.0670 -2.7563 2.1330 25 1 5.6502 -7.6040 -1.9760 26 1 6.9258 -6.4009 -1.6018 27 1 5.6660 -5.0398 -3.0677 28 1 4.1506 -5.9499 -2.7577 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215406726.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:53 Heat of formation + Delta-G solvation = -23.541066 kcal Electronic energy + Delta-G solvation = -14203.675660 eV Core-core repulsion = 11631.495288 eV Total energy + Delta-G solvation = -2572.180372 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81878 -37.56588 -36.12463 -33.21431 -32.30329 -31.03418 -28.97413 -27.41854 -23.51313 -22.80835 -21.61283 -20.20775 -17.22225 -16.83390 -16.52499 -16.02475 -15.17698 -14.28141 -14.05487 -13.44446 -13.16068 -12.93053 -12.71278 -12.55317 -11.86207 -11.75000 -11.69319 -11.36794 -10.97062 -10.73596 -10.60249 -10.47580 -10.11615 -9.84225 -9.39905 -8.63650 -8.36867 -7.56786 -6.12286 -4.12550 1.53706 1.68589 2.48822 3.24872 3.33502 3.35272 3.38829 3.99463 4.36674 4.51847 4.69653 4.98373 5.16330 5.20215 5.42400 5.60693 5.64212 5.75369 5.79918 5.86089 6.15084 6.50382 6.64690 6.73370 6.82537 6.97258 7.35000 7.37515 7.61911 8.42967 8.92628 9.47083 11.00490 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.006905 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.806989 B = 4053.921620 C = 4618.573855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.040 4.040 11 C -0.068 4.068 12 C -0.163 4.163 13 C 0.083 3.917 14 C -0.046 4.046 15 Cl -0.080 7.080 16 C -0.082 4.082 17 O -0.300 6.300 18 C 0.051 3.949 19 C -0.106 4.106 20 H 0.265 0.735 21 H 0.032 0.968 22 H 0.027 0.973 23 H 0.129 0.871 24 H 0.140 0.860 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -9.454 -2.549 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.093 0.907 9 C -0.018 4.018 10 C -0.040 4.040 11 C -0.086 4.086 12 C -0.164 4.164 13 C 0.038 3.962 14 C -0.073 4.073 15 Cl -0.051 7.051 16 C -0.101 4.101 17 O -0.215 6.215 18 C -0.024 4.024 19 C -0.143 4.143 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.120 0.880 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.975 -9.609 -2.266 15.521 hybrid contribution 0.247 0.829 -0.047 0.866 sum 12.222 -8.780 -2.313 15.226 Atomic orbital electron populations 1.69898 1.06283 1.27074 1.50302 1.24989 0.94735 0.99020 0.94374 0.86815 0.80446 0.83660 0.78664 1.20130 1.21189 1.18836 1.20921 0.88090 0.94782 1.51720 0.90724 1.18771 0.97561 0.87665 0.97764 1.20155 0.94440 0.98571 0.90839 1.20356 0.97197 0.92044 0.99008 1.20609 1.06379 0.96001 0.93399 1.19040 0.99366 0.84906 0.92921 1.20069 1.10035 0.93422 0.83779 1.98325 1.95073 1.79744 1.31964 1.20771 0.98282 0.91160 0.99864 1.86919 1.77595 1.24940 1.32022 1.23763 0.98219 1.00304 0.80100 1.21753 1.01007 0.94576 0.96979 0.92508 0.95023 0.95465 0.85290 0.84249 0.87955 0.90881 0.89158 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.26 -5.93 6.54 56.52 0.37 -5.56 15 7 C -0.52 -14.24 9.65 -34.44 -0.33 -14.57 15 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 15 9 C 0.02 0.44 4.18 -29.04 -0.12 0.32 15 10 C -0.04 -0.80 5.08 -104.57 -0.53 -1.33 15 11 C -0.07 -1.23 9.70 -39.71 -0.39 -1.61 15 12 C -0.16 -2.65 6.27 -104.10 -0.65 -3.30 15 13 C 0.08 1.44 6.83 -38.93 -0.27 1.17 15 14 C -0.05 -0.83 6.34 -39.23 -0.25 -1.08 15 15 Cl -0.08 -1.30 28.94 -51.86 -1.50 -2.80 15 16 C -0.08 -1.57 9.45 -39.64 -0.37 -1.94 15 17 O -0.30 -4.70 11.11 -21.07 -0.23 -4.93 15 18 C 0.05 0.56 8.00 38.05 0.30 0.87 15 19 C -0.11 -1.25 7.12 -26.52 -0.19 -1.43 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.03 0.71 7.14 -51.93 -0.37 0.34 15 22 H 0.03 0.60 7.52 -51.93 -0.39 0.21 15 23 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 24 H 0.14 2.55 8.06 -52.49 -0.42 2.13 15 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 LS Contribution 259.94 15.07 3.92 3.92 Total: -1.00 -30.35 259.94 -7.49 -37.84 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -2.88 Total: -2.84 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.89 Total: -21.02 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.23 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.23 Total: -4.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.35 -7.49 -37.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215406726.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.297 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds