Wall clock time and date at job start Mon Mar 30 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48504 * 109.47131 * 269.99951 * 3 2 1 5 5 H 1.48498 * 109.47645 * 29.99744 * 3 2 1 6 6 H 1.48503 * 109.47157 * 150.00122 * 3 2 1 7 7 C 1.37878 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99998 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.38385 * 120.11217 * 89.99592 * 10 9 7 12 12 C 1.37729 * 120.00066 * 179.97438 * 11 10 9 13 13 C 1.38877 * 120.79322 * 0.34347 * 12 11 10 14 14 C 1.39345 * 118.87673 * 359.51736 * 13 12 11 15 15 Cl 1.73593 * 119.89440 * 180.28192 * 14 13 12 16 16 C 1.38066 * 120.21546 * 0.28817 * 14 13 12 17 17 O 1.36415 * 111.31889 * 179.08076 * 13 12 11 18 18 C 1.43772 * 109.09433 * 18.73773 * 17 13 12 19 19 C 1.51649 * 132.16696 * 180.33511 * 12 11 10 20 20 H 0.97006 * 120.00143 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47160 * 59.99723 * 9 7 2 22 22 H 1.09000 * 109.46492 * 299.99585 * 9 7 2 23 23 H 1.07998 * 119.99999 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.83304 * 180.02562 * 16 14 13 25 25 H 1.09002 * 110.74862 * 214.09183 * 18 17 13 26 26 H 1.08999 * 110.74936 * 90.92637 * 18 17 13 27 27 H 1.09004 * 110.93303 * 46.46028 * 19 12 11 28 28 H 1.08992 * 110.97129 * 282.79834 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0023 11 6 4.2455 -3.2704 -1.1943 12 6 4.7050 -4.5687 -1.1906 13 6 4.9346 -5.2382 0.0043 14 6 4.7018 -4.5708 1.2051 15 17 4.9870 -5.3800 2.7142 16 6 4.2449 -3.2679 1.1987 17 8 5.3657 -6.5135 -0.2166 18 6 5.8581 -6.6168 -1.5634 19 6 5.0517 -5.5291 -2.3118 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8751 -0.6806 -0.8889 23 1 4.0668 -2.7635 -2.1311 24 1 4.0670 -2.7563 2.1330 25 1 5.6502 -7.6040 -1.9760 26 1 6.9258 -6.4009 -1.6018 27 1 5.6660 -5.0398 -3.0677 28 1 4.1506 -5.9499 -2.7577 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215406726.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:53 Heat of formation + Delta-G solvation = -41.574977 kcal Electronic energy + Delta-G solvation = -14204.457669 eV Core-core repulsion = 11631.495288 eV Total energy + Delta-G solvation = -2572.962381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.02660 -38.91600 -37.47752 -35.15616 -33.52373 -32.74191 -30.16241 -29.11045 -25.04402 -24.19103 -22.86512 -21.71874 -18.96353 -18.43447 -17.74689 -17.13941 -16.68874 -16.11731 -15.37896 -14.97099 -14.46099 -14.37425 -14.02198 -13.90473 -13.60591 -13.42439 -12.73993 -12.59543 -12.49724 -12.24046 -12.02434 -11.98653 -11.74934 -11.61250 -11.25012 -10.77164 -9.71196 -8.95706 -8.28127 -6.34060 0.15821 0.29031 1.12994 1.39493 1.41967 1.53286 2.25373 2.37379 2.59475 3.06487 3.46389 3.67571 3.98777 4.18184 4.22648 4.32361 4.37793 4.56409 4.79666 4.88418 4.93909 5.04165 5.08107 5.15968 5.25669 5.50273 5.62199 5.77336 6.07733 6.27169 6.72450 7.29632 8.88385 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.006905 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.806989 B = 4053.921620 C = 4618.573855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.522 4.522 8 H 0.027 0.973 9 C 0.026 3.974 10 C -0.069 4.069 11 C -0.074 4.074 12 C -0.162 4.162 13 C 0.082 3.918 14 C -0.060 4.060 15 Cl -0.069 7.069 16 C -0.093 4.093 17 O -0.315 6.315 18 C 0.046 3.954 19 C -0.102 4.102 20 H 0.267 0.733 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.337 -9.894 -3.722 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.560 4.560 8 H 0.045 0.955 9 C -0.011 4.011 10 C -0.070 4.070 11 C -0.093 4.093 12 C -0.163 4.163 13 C 0.036 3.964 14 C -0.087 4.087 15 Cl -0.040 7.040 16 C -0.111 4.111 17 O -0.229 6.229 18 C -0.028 4.028 19 C -0.139 4.139 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.157 0.843 24 H 0.155 0.845 25 H 0.153 0.847 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.234 -10.076 -3.446 17.776 hybrid contribution -0.451 0.766 0.302 0.939 sum 13.782 -9.309 -3.144 16.926 Atomic orbital electron populations 1.70064 1.08429 1.28298 1.52208 1.25977 0.95555 1.03411 0.93886 0.85656 0.79575 0.77979 0.79479 1.18719 1.21226 1.16606 1.21155 0.90785 0.93007 1.51019 0.95460 1.18611 0.94198 0.89977 0.98326 1.20017 0.96779 0.97845 0.92310 1.20478 0.97186 0.93020 0.98575 1.21055 1.04573 0.95588 0.95107 1.19254 0.98530 0.85674 0.92912 1.20137 1.10339 0.93374 0.84862 1.98318 1.94993 1.79377 1.31351 1.20752 0.98941 0.91920 0.99531 1.86909 1.77495 1.23730 1.34795 1.24180 0.99120 1.01841 0.77620 1.21920 1.02131 0.93655 0.96177 0.92368 0.94624 0.94125 0.84303 0.84519 0.84718 0.88919 0.86338 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 13.96 21.45 0.30 -58.61 15 2 C 0.01 0.50 5.47 84.65 0.46 0.97 15 3 Si 0.95 42.59 27.47 68.60 1.88 44.47 15 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.24 -9.97 6.54 99.48 0.65 -9.32 15 7 C -0.52 -29.56 9.65 25.60 0.25 -29.31 15 8 H 0.03 1.74 7.98 -2.91 -0.02 1.72 15 9 C 0.03 1.19 4.18 29.10 0.12 1.31 15 10 C -0.07 -2.81 5.08 -19.83 -0.10 -2.91 15 11 C -0.07 -2.63 9.70 22.18 0.22 -2.42 15 12 C -0.16 -4.96 6.27 -19.53 -0.12 -5.09 15 13 C 0.08 2.72 6.83 22.69 0.16 2.88 15 14 C -0.06 -2.14 6.34 22.50 0.14 -2.00 15 15 Cl -0.07 -2.22 28.94 -2.72 -0.08 -2.30 15 16 C -0.09 -3.59 9.45 22.23 0.21 -3.38 15 17 O -0.31 -9.04 11.11 -98.32 -1.09 -10.14 15 18 C 0.05 0.83 8.00 72.56 0.58 1.41 15 19 C -0.10 -2.02 7.12 30.73 0.22 -1.80 15 20 H 0.27 15.43 8.31 -92.70 -0.77 14.66 15 21 H 0.04 1.58 7.14 -2.39 -0.02 1.56 15 22 H 0.04 1.73 7.52 -2.39 -0.02 1.71 15 23 H 0.14 4.50 8.06 -2.91 -0.02 4.47 15 24 H 0.14 5.16 8.06 -2.91 -0.02 5.13 15 25 H 0.14 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 27 H 0.12 1.72 8.14 -2.39 -0.02 1.70 15 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 Total: -1.00 -67.37 259.94 4.25 -63.12 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.11 Total: 3.80 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 2.13 Total: -40.34 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.09 Total: -10.14 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -67.37 4.25 -63.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215406726.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.545 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds