Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31992 * 118.80417 * 2 1 4 4 C 1.32080 * 121.05830 * 180.31377 * 3 2 1 5 5 Cl 1.73600 * 120.62798 * 179.71255 * 4 3 2 6 6 C 1.41308 * 118.74070 * 359.44612 * 4 3 2 7 7 C 1.41358 * 121.05505 * 180.24856 * 6 4 3 8 8 H 1.08007 * 120.00037 * 134.10476 * 7 6 4 9 9 C 1.39954 * 120.00176 * 314.10978 * 7 6 4 10 10 N 1.30828 * 120.00166 * 154.38293 * 9 7 6 11 11 Si 1.86803 * 120.00100 * 334.38549 * 9 7 6 12 12 H 1.48499 * 109.47371 * 94.62377 * 11 9 7 13 13 H 1.48502 * 109.47082 * 214.62658 * 11 9 7 14 14 H 1.48506 * 109.46906 * 334.62406 * 11 9 7 15 15 C 1.41023 * 117.89107 * 0.27330 * 6 4 3 16 16 C 1.50699 * 120.60531 * 180.02562 * 15 6 4 17 17 C 1.52994 * 117.50017 * 188.74379 * 16 15 6 18 18 C 1.53001 * 117.49655 * 120.08440 * 16 15 6 19 19 N 1.31983 * 118.78755 * 359.97438 * 15 6 4 20 20 H 1.09004 * 109.46979 * 270.25016 * 1 2 3 21 21 H 1.08997 * 109.47041 * 30.25462 * 1 2 3 22 22 H 1.09003 * 109.46876 * 150.25248 * 1 2 3 23 23 H 0.97004 * 120.00411 * 179.97438 * 10 9 7 24 24 H 1.09000 * 115.54962 * 334.41641 * 16 15 6 25 25 H 1.08997 * 117.49695 * 359.97438 * 17 16 15 26 26 H 1.08996 * 117.49835 * 145.02273 * 17 16 15 27 27 H 1.09006 * 117.49829 * 214.98190 * 18 16 15 28 28 H 1.09005 * 117.50020 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1429 1.1566 0.0000 4 6 3.4627 1.2086 -0.0062 5 17 4.2876 2.7360 -0.0136 6 6 4.1904 -0.0027 -0.0009 7 6 5.6040 -0.0042 -0.0019 8 1 6.1438 -0.6525 0.6725 9 6 6.3040 0.8346 -0.8766 10 7 7.5165 1.2252 -0.5784 11 14 5.5072 1.3963 -2.4701 12 1 4.8682 2.7208 -2.2640 13 1 6.5422 1.5055 -3.5294 14 1 4.4779 0.4090 -2.8837 15 6 3.4617 -1.2101 0.0048 16 6 4.1757 -2.5371 0.0112 17 6 3.3293 -3.7958 -0.1891 18 6 3.9113 -3.4759 1.1901 19 7 2.1430 -1.1565 0.0056 20 1 -0.3633 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3633 -0.8923 -0.5099 23 1 8.0019 1.8063 -1.1848 24 1 5.1796 -2.5329 -0.4134 25 1 2.2559 -3.6640 -0.3250 26 1 3.7764 -4.6197 -0.7451 27 1 4.7411 -4.0896 1.5408 28 1 3.2212 -3.1335 1.9612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215409516.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = 51.093659 kcal Electronic energy + Delta-G solvation = -14769.508669 eV Core-core repulsion = 12232.857452 eV Total energy + Delta-G solvation = -2536.651217 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73527 -36.52804 -35.68652 -34.11158 -31.95967 -31.87021 -28.83549 -24.88529 -23.90426 -21.90747 -21.40513 -19.95962 -17.93737 -16.68116 -15.62160 -15.38904 -14.69747 -14.17771 -13.31182 -13.16053 -12.84481 -12.60505 -12.52679 -11.98024 -11.83071 -11.35281 -11.19088 -11.01467 -10.79292 -10.36649 -10.31251 -10.05771 -9.76094 -9.44585 -9.11482 -8.70039 -8.25506 -7.83738 -7.15082 -4.72996 2.07526 2.12532 2.90259 3.04399 3.11808 3.19192 3.87249 4.25057 4.48359 4.97848 5.03290 5.21176 5.53502 5.54938 5.70145 6.08927 6.09621 6.13114 6.18621 6.28716 6.31631 6.46067 6.66951 6.80387 6.81672 7.08566 7.41907 7.82549 7.99935 8.37479 8.47484 9.30700 9.81972 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.013217 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.999822 B = 2117.900192 C = 2921.383829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.186 3.814 3 N -0.490 5.490 4 C 0.103 3.897 5 Cl -0.047 7.047 6 C 0.011 3.989 7 C -0.433 4.433 8 H 0.107 0.893 9 C 0.107 3.893 10 N -0.776 5.776 11 Si 0.869 3.131 12 H -0.237 1.237 13 H -0.277 1.277 14 H -0.256 1.256 15 C 0.118 3.882 16 C -0.076 4.076 17 C -0.170 4.170 18 C -0.169 4.169 19 N -0.489 5.489 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.289 0.711 24 H 0.123 0.877 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -3.254 -0.833 5.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 N -0.206 5.206 4 C -0.072 4.072 5 Cl -0.019 7.019 6 C 0.003 3.997 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.117 4.117 10 N -0.397 5.397 11 Si 0.692 3.308 12 H -0.160 1.160 13 H -0.203 1.203 14 H -0.180 1.180 15 C -0.034 4.034 16 C -0.095 4.095 17 C -0.208 4.208 18 C -0.207 4.207 19 N -0.202 5.202 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.879 -2.944 -0.847 5.761 hybrid contribution 0.918 0.637 -0.679 1.308 sum -3.960 -2.307 -1.527 4.831 Atomic orbital electron populations 1.20097 0.87612 1.02012 1.01670 1.21925 0.96237 0.82354 1.07165 1.66841 1.09557 1.31500 1.12672 1.22157 0.88813 0.86539 1.09671 1.98297 1.76291 1.30790 1.96523 1.18698 0.95926 0.90040 0.95027 1.19147 0.88632 1.19906 1.18389 0.87571 1.25997 0.94426 0.91465 0.99771 1.69717 1.11780 1.23014 1.35214 0.87045 0.80508 0.82579 0.80648 1.16037 1.20326 1.17986 1.20745 0.87852 0.92994 1.01858 1.20606 0.99356 0.86441 1.03102 1.22898 1.00570 0.98136 0.99167 1.22886 1.03011 1.03004 0.91832 1.67227 1.10433 1.30173 1.12388 0.92043 0.91505 0.91350 0.90013 0.85897 0.88050 0.89447 0.89135 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.30 36.00 0.37 -0.57 15 2 C 0.19 4.17 7.64 -156.86 -1.20 2.97 15 3 N -0.49 -11.88 10.30 -7.23 -0.07 -11.95 15 4 C 0.10 2.58 6.20 -16.28 -0.10 2.48 15 5 Cl -0.05 -1.10 23.23 -51.86 -1.20 -2.31 15 6 C 0.01 0.27 4.56 -106.49 -0.49 -0.21 15 7 C -0.43 -10.84 8.00 -37.75 -0.30 -11.15 15 8 H 0.11 2.72 8.01 -52.48 -0.42 2.30 15 9 C 0.11 2.64 4.28 -17.34 -0.07 2.56 15 10 N -0.78 -19.09 13.93 55.55 0.77 -18.32 15 11 Si 0.87 19.80 24.96 -169.99 -4.24 15.55 15 12 H -0.24 -5.31 5.63 56.52 0.32 -4.99 15 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 14 H -0.26 -6.19 7.11 56.52 0.40 -5.79 15 15 C 0.12 2.73 6.55 -81.47 -0.53 2.19 15 16 C -0.08 -1.49 5.56 -91.77 -0.51 -2.00 15 17 C -0.17 -2.78 10.04 -26.70 -0.27 -3.05 15 18 C -0.17 -2.80 10.24 -26.69 -0.27 -3.07 15 19 N -0.49 -11.05 9.37 -6.39 -0.06 -11.11 15 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.29 6.50 8.30 -40.82 -0.34 6.16 15 24 H 0.12 2.39 7.48 -51.93 -0.39 2.00 15 25 H 0.10 1.73 7.62 -51.93 -0.40 1.34 15 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -26.81 255.27 -7.30 -34.11 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -2.96 Total: 0.03 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.38 Total: -9.84 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.64 Total: -41.39 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.24 Total: 15.55 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.20 Total: -2.31 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.81 -7.30 -34.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215409516.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.199 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds