Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31992 * 118.80417 * 2 1 4 4 C 1.32080 * 121.05830 * 180.31377 * 3 2 1 5 5 Cl 1.73600 * 120.62798 * 179.71255 * 4 3 2 6 6 C 1.41308 * 118.74070 * 359.44612 * 4 3 2 7 7 C 1.41358 * 121.05505 * 180.24856 * 6 4 3 8 8 H 1.08007 * 120.00037 * 134.10476 * 7 6 4 9 9 C 1.39954 * 120.00176 * 314.10978 * 7 6 4 10 10 N 1.30828 * 120.00166 * 154.38293 * 9 7 6 11 11 Si 1.86803 * 120.00100 * 334.38549 * 9 7 6 12 12 H 1.48499 * 109.47371 * 94.62377 * 11 9 7 13 13 H 1.48502 * 109.47082 * 214.62658 * 11 9 7 14 14 H 1.48506 * 109.46906 * 334.62406 * 11 9 7 15 15 C 1.41023 * 117.89107 * 0.27330 * 6 4 3 16 16 C 1.50699 * 120.60531 * 180.02562 * 15 6 4 17 17 C 1.52994 * 117.50017 * 188.74379 * 16 15 6 18 18 C 1.53001 * 117.49655 * 120.08440 * 16 15 6 19 19 N 1.31983 * 118.78755 * 359.97438 * 15 6 4 20 20 H 1.09004 * 109.46979 * 270.25016 * 1 2 3 21 21 H 1.08997 * 109.47041 * 30.25462 * 1 2 3 22 22 H 1.09003 * 109.46876 * 150.25248 * 1 2 3 23 23 H 0.97004 * 120.00411 * 179.97438 * 10 9 7 24 24 H 1.09000 * 115.54962 * 334.41641 * 16 15 6 25 25 H 1.08997 * 117.49695 * 359.97438 * 17 16 15 26 26 H 1.08996 * 117.49835 * 145.02273 * 17 16 15 27 27 H 1.09006 * 117.49829 * 214.98190 * 18 16 15 28 28 H 1.09005 * 117.50020 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1429 1.1566 0.0000 4 6 3.4627 1.2086 -0.0062 5 17 4.2876 2.7360 -0.0136 6 6 4.1904 -0.0027 -0.0009 7 6 5.6040 -0.0042 -0.0019 8 1 6.1438 -0.6525 0.6725 9 6 6.3040 0.8346 -0.8766 10 7 7.5165 1.2252 -0.5784 11 14 5.5072 1.3963 -2.4701 12 1 4.8682 2.7208 -2.2640 13 1 6.5422 1.5055 -3.5294 14 1 4.4779 0.4090 -2.8837 15 6 3.4617 -1.2101 0.0048 16 6 4.1757 -2.5371 0.0112 17 6 3.3293 -3.7958 -0.1891 18 6 3.9113 -3.4759 1.1901 19 7 2.1430 -1.1565 0.0056 20 1 -0.3633 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3633 -0.8923 -0.5099 23 1 8.0019 1.8063 -1.1848 24 1 5.1796 -2.5329 -0.4134 25 1 2.2559 -3.6640 -0.3250 26 1 3.7764 -4.6197 -0.7451 27 1 4.7411 -4.0896 1.5408 28 1 3.2212 -3.1335 1.9612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215409516.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = 35.753522 kcal Electronic energy + Delta-G solvation = -14770.173867 eV Core-core repulsion = 12232.857452 eV Total energy + Delta-G solvation = -2537.316415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.51686 -38.03726 -37.50565 -35.93568 -33.73761 -33.61644 -30.45960 -26.57968 -25.66732 -23.39706 -22.99151 -21.56883 -19.79922 -18.46550 -17.30337 -17.15051 -16.24371 -15.90228 -15.04510 -14.79541 -14.67003 -14.31349 -14.20094 -13.56928 -13.27446 -13.07189 -12.74161 -12.56893 -12.28843 -12.18698 -12.02581 -11.76005 -11.23069 -11.19457 -10.89089 -10.46350 -10.07290 -9.65490 -9.00268 -6.61186 0.23147 0.30236 1.05252 1.23023 1.28179 1.33184 2.03983 2.45968 2.92038 3.29178 3.41346 3.60026 3.98547 4.10325 4.32665 4.39932 4.60198 4.76340 4.84349 4.85335 4.91641 5.01939 5.20464 5.24363 5.36066 5.43083 5.69284 6.00519 6.06764 6.52818 6.61753 7.48712 8.02537 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.013217 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.999822 B = 2117.900192 C = 2921.383829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.189 3.811 3 N -0.509 5.509 4 C 0.084 3.916 5 Cl -0.044 7.044 6 C -0.010 4.010 7 C -0.453 4.453 8 H 0.089 0.911 9 C 0.093 3.907 10 N -0.801 5.801 11 Si 0.898 3.102 12 H -0.235 1.235 13 H -0.257 1.257 14 H -0.280 1.280 15 C 0.123 3.877 16 C -0.114 4.114 17 C -0.146 4.146 18 C -0.152 4.152 19 N -0.495 5.495 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.298 0.702 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -4.412 -1.060 7.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 N -0.225 5.225 4 C -0.089 4.089 5 Cl -0.016 7.016 6 C -0.018 4.018 7 C -0.481 4.481 8 H 0.107 0.893 9 C -0.129 4.129 10 N -0.425 5.425 11 Si 0.720 3.280 12 H -0.158 1.158 13 H -0.182 1.182 14 H -0.205 1.205 15 C -0.030 4.030 16 C -0.133 4.133 17 C -0.184 4.184 18 C -0.190 4.190 19 N -0.208 5.208 20 H 0.100 0.900 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.114 0.886 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.124 -4.080 -1.076 7.436 hybrid contribution 1.133 0.905 -0.560 1.554 sum -4.991 -3.175 -1.636 6.137 Atomic orbital electron populations 1.20277 0.83838 1.03596 1.03440 1.23126 0.98581 0.81915 1.03916 1.66980 1.09218 1.32347 1.14003 1.22399 0.89419 0.86919 1.10195 1.98281 1.76331 1.30448 1.96528 1.18924 0.96121 0.90826 0.95894 1.18990 0.88817 1.20899 1.19423 0.89304 1.26238 0.94585 0.91423 1.00621 1.69703 1.12402 1.24164 1.36205 0.86622 0.79921 0.81629 0.79782 1.15815 1.18164 1.20475 1.21396 0.88315 0.94155 0.99115 1.20682 0.99702 0.86191 1.06730 1.22988 0.99847 0.96562 0.98952 1.22962 1.03435 1.01258 0.91309 1.67433 1.10044 1.30139 1.13229 0.90031 0.90297 0.89391 0.89110 0.86427 0.88628 0.86404 0.86443 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.65 10.30 71.23 0.73 -0.92 15 2 C 0.19 8.12 7.64 138.63 1.06 9.18 15 3 N -0.51 -24.26 10.30 -176.78 -1.82 -26.09 15 4 C 0.08 4.18 6.20 85.41 0.53 4.71 15 5 Cl -0.04 -2.06 23.23 -2.72 -0.06 -2.13 15 6 C -0.01 -0.50 4.56 -21.07 -0.10 -0.60 15 7 C -0.45 -23.17 8.00 23.45 0.19 -22.98 15 8 H 0.09 4.73 8.01 -2.91 -0.02 4.71 15 9 C 0.09 4.62 4.28 85.26 0.37 4.98 15 10 N -0.80 -39.83 13.93 21.83 0.30 -39.53 15 11 Si 0.90 40.53 24.96 68.60 1.71 42.24 15 12 H -0.23 -10.39 5.63 99.48 0.56 -9.83 15 13 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 14 H -0.28 -13.59 7.11 99.48 0.71 -12.89 15 15 C 0.12 5.62 6.55 43.22 0.28 5.90 15 16 C -0.11 -4.32 5.56 -11.54 -0.06 -4.38 15 17 C -0.15 -4.35 10.04 30.62 0.31 -4.04 15 18 C -0.15 -4.64 10.24 30.62 0.31 -4.32 15 19 N -0.49 -21.64 9.37 -174.14 -1.63 -23.27 15 20 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.30 13.41 8.30 -92.71 -0.77 12.64 15 24 H 0.12 4.55 7.48 -2.39 -0.02 4.54 15 25 H 0.10 2.99 7.62 -2.39 -0.02 2.97 15 26 H 0.12 2.80 8.14 -2.39 -0.02 2.78 15 27 H 0.12 2.96 8.14 -2.38 -0.02 2.95 15 28 H 0.08 2.61 8.14 -2.38 -0.02 2.59 15 Total: -1.00 -56.94 255.27 3.15 -53.79 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.03 Total: 7.45 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 3.62 Total: -12.47 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -3.15 Total: -88.88 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.71 Total: 42.24 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.06 Total: -2.13 kcal Total: -56.94 3.15 -53.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215409516.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.543 kcal (2) G-P(sol) polarization free energy of solvation -56.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds