Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38394 * 119.83403 * 2 1 4 4 C 1.37873 * 120.18935 * 179.73724 * 3 2 1 5 5 C 1.39872 * 119.85114 * 0.51673 * 4 3 2 6 6 C 1.47167 * 120.16957 * 179.74316 * 5 4 3 7 7 O 1.21245 * 120.00223 * 179.72432 * 6 5 4 8 8 C 1.50700 * 119.99568 * 359.71868 * 6 5 4 9 9 C 1.50702 * 109.46869 * 180.02562 * 8 6 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.39822 * 119.66564 * 359.46463 * 5 4 3 18 18 C 1.38031 * 119.80964 * 0.27687 * 17 5 4 19 19 Cl 1.73602 * 119.92542 * 180.02562 * 18 17 5 20 20 H 1.09000 * 109.47101 * 270.02124 * 1 2 3 21 21 H 1.09003 * 109.46681 * 30.02412 * 1 2 3 22 22 H 1.09001 * 109.46678 * 150.02103 * 1 2 3 23 23 H 1.08000 * 119.90516 * 359.97438 * 3 2 1 24 24 H 1.08003 * 120.07371 * 180.27609 * 4 3 2 25 25 H 1.09004 * 109.47210 * 60.00517 * 8 6 5 26 26 H 1.08994 * 109.47551 * 300.00169 * 8 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.09512 * 180.25907 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2005 0.0000 4 6 3.5743 1.2091 0.0055 5 6 4.2780 0.0003 0.0001 6 6 5.7497 0.0013 0.0002 7 8 6.3566 -1.0483 0.0005 8 6 6.5022 1.3070 -0.0004 9 6 7.9840 1.0326 -0.0008 10 1 8.3448 0.0146 -0.0011 11 6 8.8793 2.0813 -0.0071 12 7 8.4400 3.3209 -0.0071 13 14 10.7160 1.7412 -0.0154 14 1 11.1960 1.6486 -1.4177 15 1 11.4269 2.8445 0.6792 16 1 10.9855 0.4601 0.6855 17 6 3.5762 -1.2090 0.0005 18 6 2.1959 -1.2014 0.0005 19 17 1.3216 -2.7012 0.0017 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6513 2.1334 -0.0004 24 1 4.1096 2.1471 0.0100 25 1 6.2385 1.8787 0.8894 26 1 6.2385 1.8780 -0.8905 27 1 9.0698 4.0586 -0.0112 28 1 4.1126 -2.1464 0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235784323.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = -52.969312 kcal Electronic energy + Delta-G solvation = -13865.083589 eV Core-core repulsion = 11291.627112 eV Total energy + Delta-G solvation = -2573.456477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02924 -39.41254 -37.44536 -35.15967 -33.96755 -32.11956 -30.98115 -28.49313 -25.80704 -23.66466 -23.25474 -20.72504 -18.68725 -17.73342 -17.09950 -16.50166 -16.26986 -15.90438 -15.50010 -15.12851 -14.97690 -14.69137 -14.11240 -13.38524 -13.22708 -13.20666 -12.87197 -12.84323 -12.61284 -12.41431 -12.28402 -12.08055 -11.87989 -11.43890 -10.63826 -10.40030 -9.96177 -9.69535 -8.26678 -6.34719 -0.40146 0.14707 1.03890 1.39097 1.39224 1.47467 1.51837 2.39016 2.65790 3.08388 3.24283 3.70371 3.84771 4.09707 4.18288 4.35623 4.65499 4.72952 4.79487 4.82843 5.03465 5.18194 5.22257 5.26049 5.31821 5.34193 5.69566 5.72135 6.09842 6.73630 6.81339 7.34090 8.85032 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.049503 B = 0.005238 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.485726 B = 5344.584494 C = 5889.614377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.046 4.046 3 C -0.113 4.113 4 C -0.061 4.061 5 C -0.176 4.176 6 C 0.395 3.605 7 O -0.496 6.496 8 C -0.017 4.017 9 C -0.548 4.548 10 H 0.053 0.947 11 C 0.013 3.987 12 N -0.921 5.921 13 Si 0.961 3.039 14 H -0.271 1.271 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.068 4.068 18 C -0.061 4.061 19 Cl -0.059 7.059 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.175 0.825 24 H 0.146 0.854 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 -3.539 0.024 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.080 4.080 5 C -0.177 4.177 6 C 0.276 3.724 7 O -0.374 6.374 8 C -0.054 4.054 9 C -0.586 4.586 10 H 0.072 0.928 11 C -0.186 4.186 12 N -0.560 5.560 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.087 4.087 18 C -0.087 4.087 19 Cl -0.030 7.030 20 H 0.111 0.889 21 H 0.115 0.885 22 H 0.094 0.906 23 H 0.193 0.807 24 H 0.163 0.837 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.908 -4.041 0.025 18.358 hybrid contribution 1.316 -0.307 -0.007 1.351 sum -16.591 -4.348 0.018 17.152 Atomic orbital electron populations 1.21032 0.87414 1.04859 1.04299 1.20426 0.98666 0.90570 0.95063 1.21382 0.92820 0.98749 1.00144 1.21841 0.95312 0.97362 0.93436 1.20652 0.94610 0.94833 1.07625 1.23340 0.88434 0.91736 0.68888 1.90341 1.72333 1.36337 1.38426 1.19423 0.94957 0.91794 0.99189 1.21436 0.92140 0.93323 1.51728 0.92845 1.25752 1.03746 0.94720 0.94353 1.70014 1.36342 0.98807 1.50854 0.85514 0.79442 0.77913 0.78605 1.19665 1.19763 1.19988 1.21254 0.92770 0.98358 0.96304 1.20754 0.91351 0.88135 1.08471 1.98342 1.75744 1.31882 1.97014 0.88950 0.88452 0.90645 0.80722 0.83673 0.93053 0.93078 0.92312 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.60 71.24 0.68 -0.95 15 2 C -0.05 -0.99 5.89 -19.76 -0.12 -1.11 15 3 C -0.11 -2.43 9.67 22.22 0.21 -2.22 15 4 C -0.06 -1.79 9.47 22.58 0.21 -1.58 15 5 C -0.18 -6.41 5.87 -20.15 -0.12 -6.53 15 6 C 0.40 18.41 7.11 28.03 0.20 18.61 15 7 O -0.50 -26.03 15.45 -2.92 -0.05 -26.07 15 8 C -0.02 -0.87 4.07 29.10 0.12 -0.75 15 9 C -0.55 -32.30 8.92 25.60 0.23 -32.07 15 10 H 0.05 3.29 6.75 -2.91 -0.02 3.27 15 11 C 0.01 0.77 5.46 84.66 0.46 1.23 15 12 N -0.92 -53.33 13.29 21.45 0.28 -53.05 15 13 Si 0.96 45.13 29.54 68.60 2.03 47.15 15 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 16 H -0.27 -12.95 7.11 99.48 0.71 -12.25 15 17 C -0.07 -2.24 9.38 22.60 0.21 -2.03 15 18 C -0.06 -1.60 6.31 22.28 0.14 -1.46 15 19 Cl -0.06 -1.35 27.27 -2.72 -0.07 -1.42 15 20 H 0.09 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.10 0.91 8.08 -2.39 -0.02 0.89 15 22 H 0.07 1.05 6.88 -2.39 -0.02 1.03 15 23 H 0.18 2.39 8.06 -2.91 -0.02 2.36 15 24 H 0.15 4.20 7.05 -2.91 -0.02 4.18 15 25 H 0.05 2.64 8.08 -2.38 -0.02 2.62 15 26 H 0.05 2.63 8.09 -2.39 -0.02 2.61 15 27 H 0.27 14.53 8.31 -92.70 -0.77 13.76 15 28 H 0.13 4.43 7.65 -2.91 -0.02 4.41 15 Total: -1.00 -66.97 265.72 5.60 -61.37 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.17 Total: 0.89 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 2.24 Total: -28.87 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.05 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -66.97 5.60 -61.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235784323.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.404 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds