Wall clock time and date at job start Mon Mar 30 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37833 * 120.08251 * 2 1 4 4 C 1.38551 * 120.15581 * 180.30224 * 3 2 1 5 5 Cl 1.73601 * 119.83886 * 179.74004 * 4 3 2 6 6 C 1.38580 * 120.32146 * 359.71746 * 4 3 2 7 7 C 1.37791 * 120.15927 * 0.02657 * 6 4 3 8 8 C 1.39883 * 120.07764 * 179.76931 * 2 1 3 9 9 C 1.47090 * 120.15639 * 359.96947 * 8 2 1 10 10 O 1.21261 * 120.00270 * 353.72235 * 9 8 2 11 11 C 1.50700 * 119.99619 * 173.71895 * 9 8 2 12 12 C 1.50703 * 109.47117 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99970 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99702 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00167 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46931 * 60.00429 * 16 14 12 18 18 H 1.48500 * 109.47508 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47373 * 300.00452 * 16 14 12 20 20 H 1.08994 * 109.47058 * 263.59460 * 1 2 3 21 21 H 1.08998 * 109.46998 * 23.59288 * 1 2 3 22 22 H 1.08997 * 109.47044 * 143.58666 * 1 2 3 23 23 H 1.07996 * 119.92355 * 0.02562 * 3 2 1 24 24 H 1.08003 * 119.92071 * 180.02562 * 6 4 3 25 25 H 1.07999 * 120.08307 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47211 * 60.00460 * 11 9 8 27 27 H 1.08995 * 109.47359 * 300.00145 * 11 9 8 28 28 H 0.96998 * 120.00122 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1927 0.0000 4 6 3.5834 1.1945 -0.0063 5 17 4.4452 2.7014 -0.0131 6 6 4.2846 -0.0009 -0.0068 7 6 3.6072 -1.2008 -0.0015 8 6 2.2081 -1.2105 0.0049 9 6 1.4778 -2.4873 0.0107 10 8 0.2708 -2.4949 0.1261 11 6 2.2299 -3.7860 -0.1269 12 6 1.2568 -4.9362 -0.0907 13 1 0.1996 -4.7458 0.0203 14 6 1.7162 -6.2316 -0.2005 15 7 3.0037 -6.4634 -0.3362 16 14 0.5101 -7.6572 -0.1564 17 1 -0.4558 -7.5231 -1.2763 18 1 1.2511 -8.9369 -0.2918 19 1 -0.2239 -7.6449 1.1345 20 1 -0.3633 -0.1146 1.0212 21 1 -0.3633 0.9418 -0.4113 22 1 -0.3633 -0.8270 -0.6100 23 1 1.6580 2.1280 0.0004 24 1 5.3645 0.0081 -0.0113 25 1 4.1549 -2.1316 -0.0023 26 1 2.9386 -3.8843 0.6954 27 1 2.7688 -3.7951 -1.0742 28 1 3.3269 -7.3746 -0.4130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235796943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:00 Heat of formation + Delta-G solvation = -31.989955 kcal Electronic energy + Delta-G solvation = -14031.448582 eV Core-core repulsion = 11458.901838 eV Total energy + Delta-G solvation = -2572.546744 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.81083 -37.75573 -36.40390 -33.18473 -32.47032 -31.16529 -28.87269 -26.93633 -24.25010 -22.93823 -21.27838 -19.15422 -16.73876 -16.24118 -15.82817 -15.36193 -14.60647 -14.42263 -14.01798 -13.32004 -13.27753 -13.07016 -12.62286 -12.23696 -12.05830 -11.88260 -11.38039 -11.25410 -11.11772 -10.85130 -10.79629 -10.63243 -10.03322 -9.32827 -8.82328 -8.56045 -8.46220 -8.44008 -6.10176 -4.11032 0.82890 1.36692 2.04805 2.97443 3.33485 3.36470 3.41180 3.95097 4.40294 4.77307 4.86184 4.87745 5.23162 5.27897 5.36499 5.58285 5.80475 5.92271 5.98808 6.18271 6.22024 6.38204 6.45119 6.78386 6.89178 7.15865 7.27584 7.88822 8.15797 8.56977 8.97662 9.54168 11.01866 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.046865 B = 0.005405 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.319472 B = 5178.823611 C = 5752.831976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.024 4.024 3 C -0.131 4.131 4 C -0.013 4.013 5 Cl -0.078 7.078 6 C -0.134 4.134 7 C -0.053 4.053 8 C -0.155 4.155 9 C 0.389 3.611 10 O -0.451 6.451 11 C -0.021 4.021 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.098 0.902 23 H 0.133 0.867 24 H 0.135 0.865 25 H 0.149 0.851 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 14.802 0.382 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.025 4.025 3 C -0.150 4.150 4 C -0.040 4.040 5 Cl -0.049 7.049 6 C -0.152 4.152 7 C -0.071 4.071 8 C -0.156 4.156 9 C 0.268 3.732 10 O -0.327 6.327 11 C -0.057 4.057 12 C -0.556 4.556 13 H 0.091 0.909 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.150 0.850 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.968 14.784 0.421 14.920 hybrid contribution -0.157 -0.568 0.015 0.590 sum 1.811 14.216 0.436 14.337 Atomic orbital electron populations 1.21087 0.89747 1.02992 1.03785 1.20235 0.97010 0.91293 0.93950 1.20858 0.91787 0.98530 1.03839 1.21129 0.92429 0.86822 1.03629 1.98356 1.77199 1.32509 1.96865 1.21000 1.00533 0.90540 1.03165 1.21602 0.93337 0.98314 0.93876 1.21161 0.94664 0.95945 1.03852 1.23317 0.89144 0.90170 0.70616 1.90322 1.16903 1.89359 1.36165 1.19542 0.97285 0.89379 0.99510 1.21129 0.94337 0.89969 1.50180 0.90941 1.24994 0.95302 0.99062 0.95019 1.69936 1.12837 1.20916 1.50114 0.86519 0.80932 0.80950 0.78838 1.20110 1.21311 1.20114 0.90492 0.92571 0.88390 0.84960 0.84675 0.83369 0.92746 0.92763 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.73 36.01 0.31 -1.45 15 2 C -0.02 -0.38 5.92 -104.15 -0.62 -1.00 15 3 C -0.13 -1.77 9.44 -39.61 -0.37 -2.14 15 4 C -0.01 -0.18 6.33 -39.34 -0.25 -0.43 15 5 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 15 6 C -0.13 -1.78 9.81 -39.62 -0.39 -2.17 15 7 C -0.05 -0.81 9.47 -39.12 -0.37 -1.18 15 8 C -0.16 -2.73 5.87 -105.06 -0.62 -3.35 15 9 C 0.39 8.37 7.04 -30.72 -0.22 8.15 15 10 O -0.45 -10.48 12.46 5.57 0.07 -10.41 15 11 C -0.02 -0.50 4.15 -29.03 -0.12 -0.62 15 12 C -0.52 -14.53 8.92 -34.44 -0.31 -14.83 15 13 H 0.07 2.08 6.75 -52.49 -0.35 1.73 15 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 15 N -0.90 -25.80 13.29 55.43 0.74 -25.07 15 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 20 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.06 0.66 8.04 -51.93 -0.42 0.24 15 22 H 0.10 1.67 5.87 -51.93 -0.30 1.37 15 23 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 24 H 0.14 1.48 8.06 -52.48 -0.42 1.06 15 25 H 0.15 2.21 6.99 -52.49 -0.37 1.84 15 26 H 0.05 1.34 7.90 -51.93 -0.41 0.93 15 27 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 262.94 15.07 3.96 3.96 Total: -1.00 -29.34 262.94 -7.48 -36.82 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -2.68 Total: -2.03 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.04 Total: -17.51 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.07 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.34 -7.48 -36.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235796943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.826 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds