Wall clock time and date at job start Mon Mar 30 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37833 * 120.08251 * 2 1 4 4 C 1.38551 * 120.15581 * 180.30224 * 3 2 1 5 5 Cl 1.73601 * 119.83886 * 179.74004 * 4 3 2 6 6 C 1.38580 * 120.32146 * 359.71746 * 4 3 2 7 7 C 1.37791 * 120.15927 * 0.02657 * 6 4 3 8 8 C 1.39883 * 120.07764 * 179.76931 * 2 1 3 9 9 C 1.47090 * 120.15639 * 359.96947 * 8 2 1 10 10 O 1.21261 * 120.00270 * 353.72235 * 9 8 2 11 11 C 1.50700 * 119.99619 * 173.71895 * 9 8 2 12 12 C 1.50703 * 109.47117 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99970 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99702 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00167 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46931 * 60.00429 * 16 14 12 18 18 H 1.48500 * 109.47508 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47373 * 300.00452 * 16 14 12 20 20 H 1.08994 * 109.47058 * 263.59460 * 1 2 3 21 21 H 1.08998 * 109.46998 * 23.59288 * 1 2 3 22 22 H 1.08997 * 109.47044 * 143.58666 * 1 2 3 23 23 H 1.07996 * 119.92355 * 0.02562 * 3 2 1 24 24 H 1.08003 * 119.92071 * 180.02562 * 6 4 3 25 25 H 1.07999 * 120.08307 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47211 * 60.00460 * 11 9 8 27 27 H 1.08995 * 109.47359 * 300.00145 * 11 9 8 28 28 H 0.96998 * 120.00122 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1927 0.0000 4 6 3.5834 1.1945 -0.0063 5 17 4.4452 2.7014 -0.0131 6 6 4.2846 -0.0009 -0.0068 7 6 3.6072 -1.2008 -0.0015 8 6 2.2081 -1.2105 0.0049 9 6 1.4778 -2.4873 0.0107 10 8 0.2708 -2.4949 0.1261 11 6 2.2299 -3.7860 -0.1269 12 6 1.2568 -4.9362 -0.0907 13 1 0.1996 -4.7458 0.0203 14 6 1.7162 -6.2316 -0.2005 15 7 3.0037 -6.4634 -0.3362 16 14 0.5101 -7.6572 -0.1564 17 1 -0.4558 -7.5231 -1.2763 18 1 1.2511 -8.9369 -0.2918 19 1 -0.2239 -7.6449 1.1345 20 1 -0.3633 -0.1146 1.0212 21 1 -0.3633 0.9418 -0.4113 22 1 -0.3633 -0.8270 -0.6100 23 1 1.6580 2.1280 0.0004 24 1 5.3645 0.0081 -0.0113 25 1 4.1549 -2.1316 -0.0023 26 1 2.9386 -3.8843 0.6954 27 1 2.7688 -3.7951 -1.0742 28 1 3.3269 -7.3746 -0.4130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235796943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:00 Heat of formation + Delta-G solvation = -47.419742 kcal Electronic energy + Delta-G solvation = -14032.117668 eV Core-core repulsion = 11458.901838 eV Total energy + Delta-G solvation = -2573.215829 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.17663 -39.20996 -37.45910 -35.18980 -33.75487 -32.54994 -30.66868 -28.20316 -26.03774 -24.37627 -22.52787 -20.68626 -18.58614 -17.69474 -17.21309 -16.76108 -16.44487 -15.98904 -15.32445 -14.98696 -14.62742 -14.20881 -14.07486 -13.76415 -13.37602 -13.21213 -13.08337 -12.75311 -12.54168 -12.46455 -12.26146 -12.05941 -11.82389 -11.42523 -10.62610 -10.13844 -9.92815 -9.72728 -8.25123 -6.33302 -0.44202 0.24143 1.00777 1.39873 1.41881 1.49139 1.50533 2.39674 2.64582 3.10090 3.31611 3.69974 3.78676 4.11355 4.22171 4.46183 4.58266 4.76317 4.78428 4.89351 5.05309 5.10420 5.15705 5.24658 5.27602 5.53834 5.68990 5.71565 6.11509 6.76609 6.86886 7.35544 8.86529 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.046865 B = 0.005405 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.319472 B = 5178.823611 C = 5752.831976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.124 4.124 4 C -0.008 4.008 5 Cl -0.054 7.054 6 C -0.127 4.127 7 C -0.056 4.056 8 C -0.181 4.181 9 C 0.392 3.608 10 O -0.477 6.477 11 C -0.019 4.019 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.272 1.272 20 H 0.074 0.926 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.145 0.855 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 16.485 0.412 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.142 4.142 4 C -0.035 4.035 5 Cl -0.025 7.025 6 C -0.146 4.146 7 C -0.075 4.075 8 C -0.182 4.182 9 C 0.273 3.727 10 O -0.355 6.355 11 C -0.056 4.056 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.563 5.563 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.197 1.197 20 H 0.092 0.908 21 H 0.108 0.892 22 H 0.088 0.912 23 H 0.179 0.821 24 H 0.179 0.821 25 H 0.162 0.838 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.391 16.478 0.450 16.657 hybrid contribution -0.199 -0.968 0.002 0.988 sum 2.192 15.510 0.452 15.671 Atomic orbital electron populations 1.21031 0.89425 1.03592 1.03278 1.20340 0.97427 0.91297 0.93849 1.21084 0.92054 0.98624 1.02487 1.21288 0.92651 0.87739 1.01785 1.98374 1.76658 1.30862 1.96597 1.21223 1.01805 0.89680 1.01858 1.21607 0.92498 0.99337 0.94043 1.20774 0.95401 0.94565 1.07492 1.23142 0.88747 0.90964 0.69880 1.90310 1.17736 1.89856 1.37645 1.19419 0.96772 0.90674 0.98704 1.21420 0.94351 0.91725 1.50772 0.92423 1.25780 0.97066 1.01476 0.94467 1.70020 1.14211 1.21676 1.50416 0.85560 0.78888 0.78048 0.78925 1.19686 1.20087 1.19692 0.90752 0.89218 0.91218 0.82099 0.82063 0.83761 0.93490 0.93720 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 8.73 71.24 0.62 -2.74 15 2 C -0.03 -0.86 5.92 -19.56 -0.12 -0.97 15 3 C -0.12 -2.96 9.44 22.25 0.21 -2.75 15 4 C -0.01 -0.18 6.33 22.43 0.14 -0.04 15 5 Cl -0.05 -1.04 28.95 -2.72 -0.08 -1.12 15 6 C -0.13 -3.08 9.81 22.25 0.22 -2.86 15 7 C -0.06 -1.71 9.47 22.57 0.21 -1.49 15 8 C -0.18 -6.41 5.87 -20.15 -0.12 -6.53 15 9 C 0.39 17.53 7.04 28.01 0.20 17.73 15 10 O -0.48 -23.10 12.46 -2.97 -0.04 -23.14 15 11 C -0.02 -0.96 4.15 29.10 0.12 -0.84 15 12 C -0.54 -31.57 8.92 25.60 0.23 -31.34 15 13 H 0.06 3.44 6.75 -2.91 -0.02 3.42 15 14 C 0.01 0.62 5.46 84.65 0.46 1.09 15 15 N -0.92 -53.76 13.29 21.45 0.28 -53.47 15 16 Si 0.96 44.78 29.54 68.60 2.03 46.80 15 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 20 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 21 H 0.09 1.90 8.04 -2.39 -0.02 1.88 15 22 H 0.07 2.42 5.87 -2.39 -0.01 2.41 15 23 H 0.16 2.91 8.06 -2.91 -0.02 2.88 15 24 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 25 H 0.14 4.39 6.99 -2.91 -0.02 4.37 15 26 H 0.05 2.42 7.90 -2.39 -0.02 2.40 15 27 H 0.04 2.32 8.14 -2.39 -0.02 2.30 15 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 15 Total: -1.00 -63.53 262.94 5.55 -57.98 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.17 Total: 3.70 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.18 Total: -30.76 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.28 Total: -53.47 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.04 Total: -23.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -63.53 5.55 -57.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235796943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.559 kcal (2) G-P(sol) polarization free energy of solvation -63.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds