Wall clock time and date at job start Mon Mar 30 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76197 * 100.00126 * 2 1 4 4 C 1.39681 * 119.47480 * 0.02562 * 3 2 1 5 5 C 1.36034 * 121.22431 * 179.75823 * 4 3 2 6 6 C 1.41056 * 120.08444 * 0.47919 * 5 4 3 7 7 C 1.40441 * 120.51153 * 179.78617 * 6 5 4 8 8 H 1.08004 * 119.99735 * 214.08773 * 7 6 5 9 9 C 1.40223 * 120.00221 * 34.08696 * 7 6 5 10 10 N 1.30677 * 119.99987 * 191.36691 * 9 7 6 11 11 Si 1.86800 * 119.99717 * 11.35898 * 9 7 6 12 12 H 1.48495 * 109.47192 * 267.36613 * 11 9 7 13 13 H 1.48499 * 109.47104 * 27.37205 * 11 9 7 14 14 H 1.48507 * 109.46940 * 147.36500 * 11 9 7 15 15 C 1.46618 * 118.97660 * 359.50811 * 6 5 4 16 16 C 1.47279 * 120.57753 * 180.27402 * 15 6 5 17 17 O 1.21536 * 120.00557 * 355.47799 * 16 15 6 18 18 O 1.34815 * 119.99798 * 175.48476 * 16 15 6 19 19 C 1.39076 * 118.84318 * 0.25857 * 15 6 5 20 20 H 1.08994 * 109.46789 * 299.99776 * 1 2 3 21 21 H 1.09001 * 109.47064 * 60.00376 * 1 2 3 22 22 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 23 23 H 1.08010 * 119.38458 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.95635 * 180.26506 * 5 4 3 25 25 H 0.96999 * 119.99656 * 179.97438 * 10 9 7 26 26 H 0.96694 * 116.99909 * 179.97438 * 18 16 15 27 27 H 1.08005 * 120.09340 * 179.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 1.0379 2.6232 0.0005 5 6 1.2331 3.9695 0.0055 6 6 2.5425 4.4941 -0.0001 7 6 2.7543 5.8824 0.0005 8 1 3.5992 6.2999 -0.5273 9 6 1.8691 6.7266 0.6861 10 7 1.9299 8.0198 0.5086 11 14 0.6028 6.0023 1.8528 12 1 -0.6678 5.7680 1.1209 13 1 1.1074 4.7146 2.3936 14 1 0.3623 6.9487 2.9717 15 6 3.6788 3.5676 -0.0001 16 6 5.0607 4.0770 0.0003 17 8 5.2682 5.2717 -0.0823 18 8 6.0957 3.2180 0.0922 19 6 3.4291 2.1995 -0.0002 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.0304 2.2337 0.0014 24 1 0.3844 4.6375 0.0101 25 1 1.3173 8.6037 0.9826 26 1 6.9843 3.5992 0.0881 27 1 4.2511 1.4989 -0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238411425.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:29 Heat of formation + Delta-G solvation = -75.615445 kcal Electronic energy + Delta-G solvation = -14461.970749 eV Core-core repulsion = 11889.575969 eV Total energy + Delta-G solvation = -2572.394781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14188 -37.33129 -35.06056 -33.94494 -30.85310 -30.63612 -28.50430 -25.89072 -23.03964 -21.64822 -20.07076 -17.81717 -17.30595 -16.68646 -15.61259 -15.10283 -14.53587 -14.51684 -13.92590 -13.71919 -13.43828 -12.95644 -12.66761 -12.44301 -12.15927 -11.68855 -11.13635 -10.98866 -10.77112 -10.63954 -10.53081 -10.26676 -9.75562 -9.41433 -9.07940 -8.50854 -8.08777 -7.26542 -6.81546 -4.73044 1.82108 2.32622 2.34954 2.90155 3.01045 3.10693 3.11277 3.62690 3.73866 4.10021 4.28779 5.09810 5.32676 5.35748 5.68006 5.75240 5.91201 6.33897 6.38128 6.47131 6.78788 6.98639 7.09651 7.23558 7.38219 7.51382 7.70078 8.11243 8.32910 8.51989 9.03809 9.69574 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.011218 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.367152 B = 2495.381785 C = 3699.981368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.162 6.162 3 C -0.237 4.237 4 C -0.054 4.054 5 C -0.220 4.220 6 C 0.117 3.883 7 C -0.376 4.376 8 H 0.126 0.874 9 C 0.075 3.925 10 N -0.769 5.769 11 Si 0.913 3.087 12 H -0.264 1.264 13 H -0.238 1.238 14 H -0.284 1.284 15 C -0.242 4.242 16 C 0.519 3.481 17 O -0.520 6.520 18 O -0.533 6.533 19 C 0.022 3.978 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.294 0.706 26 H 0.395 0.605 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -8.203 0.986 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.074 5.926 3 C -0.349 4.349 4 C -0.076 4.076 5 C -0.240 4.240 6 C 0.112 3.888 7 C -0.402 4.402 8 H 0.144 0.856 9 C -0.149 4.149 10 N -0.390 5.390 11 Si 0.738 3.262 12 H -0.190 1.190 13 H -0.161 1.161 14 H -0.211 1.211 15 C -0.247 4.247 16 C 0.369 3.631 17 O -0.411 6.411 18 O -0.345 6.345 19 C -0.001 4.001 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.251 0.749 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.204 -8.743 0.989 9.071 hybrid contribution -0.895 1.272 0.449 1.619 sum -3.100 -7.471 1.438 8.215 Atomic orbital electron populations 1.23448 0.96460 1.05456 1.05070 1.84949 1.05312 1.06586 1.95772 1.20608 0.95837 0.93454 1.25024 1.20453 0.96375 0.93526 0.97227 1.20644 0.96250 0.94280 1.12836 1.18473 0.89367 0.92668 0.88327 1.20261 1.08665 0.89504 1.21730 0.85623 1.26553 0.96704 0.94665 0.96955 1.69575 1.31800 1.04868 1.32743 0.86287 0.79837 0.80773 0.79339 1.19007 1.16055 1.21101 1.19391 0.88138 0.92367 1.24771 1.20832 0.85316 0.83718 0.73277 1.90819 1.85502 1.16840 1.47915 1.84631 1.18222 1.44323 1.87310 1.20610 0.94028 0.93940 0.91552 0.90416 0.90346 0.88952 0.87952 0.87201 0.89492 0.74896 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.95 101.05 0.90 -0.90 15 2 S -0.16 -2.78 22.69 -107.50 -2.44 -5.22 15 3 C -0.24 -4.89 6.13 -38.66 -0.24 -5.13 15 4 C -0.05 -1.11 9.06 -39.83 -0.36 -1.47 15 5 C -0.22 -4.99 6.94 -39.31 -0.27 -5.26 15 6 C 0.12 2.92 5.22 -104.62 -0.55 2.38 15 7 C -0.38 -10.01 8.46 -38.01 -0.32 -10.33 15 8 H 0.13 3.68 6.02 -52.48 -0.32 3.37 15 9 C 0.08 1.88 5.47 -17.30 -0.09 1.79 15 10 N -0.77 -19.39 13.92 55.56 0.77 -18.62 15 11 Si 0.91 19.39 24.46 -169.99 -4.16 15.23 15 12 H -0.26 -5.29 6.71 56.52 0.38 -4.91 15 13 H -0.24 -5.24 6.71 56.52 0.38 -4.86 15 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 15 C -0.24 -5.77 6.07 -102.53 -0.62 -6.39 15 16 C 0.52 11.91 8.24 34.41 0.28 12.19 15 17 O -0.52 -13.34 14.51 -19.29 -0.28 -13.62 15 18 O -0.53 -9.73 12.72 -40.81 -0.52 -10.25 15 19 C 0.02 0.47 9.35 -38.89 -0.36 0.11 15 20 H 0.08 1.02 7.50 -51.92 -0.39 0.63 15 21 H 0.08 1.02 7.50 -51.92 -0.39 0.63 15 22 H 0.09 0.99 8.14 -51.91 -0.42 0.57 15 23 H 0.10 1.80 5.33 -52.48 -0.28 1.52 15 24 H 0.11 2.40 4.76 -52.48 -0.25 2.15 15 25 H 0.29 6.57 8.29 -40.82 -0.34 6.23 15 26 H 0.40 5.17 9.11 45.56 0.42 5.58 15 27 H 0.11 2.29 7.64 -52.48 -0.40 1.89 15 LS Contribution 247.04 15.07 3.72 3.72 Total: -1.00 -28.63 247.04 -5.74 -34.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.21 Total: 7.39 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.63 Total: -13.02 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.77 Total: -18.62 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.80 Total: -23.87 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.16 Total: 15.23 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.44 Total: -5.22 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.63 -5.74 -34.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238411425.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.239 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds