Wall clock time and date at job start Mon Mar 30 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81009 * 1 3 3 C 1.76197 * 99.99662 * 2 1 4 4 C 1.39667 * 119.95622 * 0.02562 * 3 2 1 5 5 C 1.36102 * 120.45424 * 180.02562 * 4 3 2 6 6 C 1.41089 * 120.33230 * 359.97438 * 5 4 3 7 7 C 1.41163 * 120.05607 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99670 * 24.62647 * 7 6 5 9 9 C 1.39827 * 119.99928 * 204.63135 * 7 6 5 10 10 N 1.30918 * 120.00072 * 17.85459 * 9 7 6 11 11 Si 1.86800 * 119.99824 * 197.86161 * 9 7 6 12 12 H 1.48504 * 109.47294 * 59.99599 * 11 9 7 13 13 H 1.48499 * 109.47361 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47090 * 299.99781 * 11 9 7 15 15 C 1.40501 * 119.88648 * 359.72874 * 6 5 4 16 16 C 1.39030 * 119.56325 * 0.52404 * 15 6 5 17 17 C 1.47359 * 120.16485 * 179.77245 * 16 15 6 18 18 O 1.21520 * 120.00070 * 179.44498 * 17 16 15 19 19 O 1.34764 * 120.00426 * 359.72639 * 17 16 15 20 20 H 1.09006 * 109.46769 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46979 * 299.99755 * 1 2 3 22 22 H 1.08995 * 109.46919 * 60.00577 * 1 2 3 23 23 H 1.08000 * 119.77104 * 0.02562 * 4 3 2 24 24 H 1.07995 * 119.83390 * 180.02562 * 5 4 3 25 25 H 0.96998 * 119.99686 * 179.97438 * 10 9 7 26 26 H 1.08008 * 120.21763 * 180.27785 * 15 6 5 27 27 H 0.96700 * 116.99879 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 1.0453 2.6321 0.0005 5 6 1.2699 3.9745 0.0000 6 6 2.5885 4.4763 -0.0005 7 6 2.8148 5.8696 -0.0005 8 1 2.0622 6.5388 0.3896 9 6 4.0131 6.3833 -0.5057 10 7 4.7653 5.6460 -1.2832 11 14 4.5410 8.1217 -0.0710 12 1 4.6926 8.2394 1.4016 13 1 5.8376 8.4244 -0.7284 14 1 3.5118 9.0837 -0.5410 15 6 3.6761 3.5867 0.0052 16 6 3.4415 2.2164 0.0004 17 6 4.5723 1.2715 0.0013 18 8 4.3638 0.0744 0.0072 19 8 5.8378 1.7350 0.0012 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 0.0322 2.2578 0.0014 24 1 0.4346 4.6589 0.0009 25 1 5.5964 6.0025 -1.6340 26 1 4.6878 3.9651 0.0094 27 1 6.5463 1.0770 0.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238411572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:31 Heat of formation + Delta-G solvation = -92.940477 kcal Electronic energy + Delta-G solvation = -14403.093448 eV Core-core repulsion = 11829.947397 eV Total energy + Delta-G solvation = -2573.146050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14944 -39.15319 -37.00975 -35.64341 -32.27051 -31.95467 -29.48552 -27.33531 -25.30821 -23.17634 -21.85326 -19.34127 -18.93348 -18.26585 -17.41406 -16.67737 -16.52178 -15.68073 -15.63617 -14.92348 -14.75158 -14.47523 -14.06511 -13.74118 -13.37661 -13.15395 -12.88173 -12.67634 -12.46839 -12.27712 -12.07758 -11.76355 -11.61260 -11.15086 -10.44288 -10.11731 -9.72786 -8.73336 -8.30482 -6.30402 0.04663 0.82052 1.08845 1.41896 1.47406 1.54659 1.79803 1.81452 2.20495 2.33884 2.64598 3.54772 4.17604 4.35983 4.38934 4.41880 4.70181 4.87808 4.97755 5.03062 5.21214 5.34492 5.50861 5.58030 5.72516 5.91117 6.11453 6.46897 6.80295 6.81418 7.10890 8.25884 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.008276 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.052366 B = 3382.311071 C = 4181.879911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.108 6.108 3 C -0.175 4.175 4 C -0.101 4.101 5 C -0.188 4.188 6 C 0.065 3.935 7 C -0.480 4.480 8 H 0.089 0.911 9 C 0.035 3.965 10 N -0.816 5.816 11 Si 0.985 3.015 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.257 1.257 15 C -0.112 4.112 16 C -0.116 4.116 17 C 0.523 3.477 18 O -0.522 6.522 19 O -0.506 6.506 20 H 0.116 0.884 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.138 0.862 24 H 0.120 0.880 25 H 0.293 0.707 26 H 0.124 0.876 27 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -2.469 1.798 3.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 S 0.132 5.868 3 C -0.288 4.288 4 C -0.124 4.124 5 C -0.209 4.209 6 C 0.061 3.939 7 C -0.509 4.509 8 H 0.107 0.893 9 C -0.182 4.182 10 N -0.440 5.440 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.194 1.194 14 H -0.181 1.181 15 C -0.133 4.133 16 C -0.123 4.123 17 C 0.370 3.630 18 O -0.415 6.415 19 O -0.318 6.318 20 H 0.135 0.865 21 H 0.102 0.898 22 H 0.099 0.901 23 H 0.155 0.845 24 H 0.138 0.862 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -1.408 -3.556 1.643 4.162 hybrid contribution 0.077 1.352 -0.058 1.356 sum -1.332 -2.203 1.584 3.023 Atomic orbital electron populations 1.23852 0.97148 1.07188 1.05351 1.86125 1.04818 1.02485 1.93395 1.21475 0.94228 0.96780 1.16336 1.20667 0.97152 0.93016 1.01542 1.21097 0.96479 0.94737 1.08552 1.17998 0.91444 0.94350 0.90108 1.19827 1.02697 0.92246 1.36125 0.89269 1.26814 0.95144 1.04466 0.91742 1.69867 1.12158 1.40206 1.21813 0.85197 0.78319 0.76263 0.79704 1.18396 1.19439 1.18101 1.21624 1.00187 0.89995 1.01487 1.18721 0.89616 0.93055 1.10877 1.21107 0.83307 0.86890 0.71719 1.90727 1.84990 1.17579 1.48186 1.84663 1.16294 1.45379 1.85498 0.86507 0.89832 0.90061 0.84466 0.86163 0.89644 0.85780 0.71532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.97 113.37 1.02 -3.66 15 2 S -0.11 -4.25 19.60 -56.49 -1.11 -5.36 15 3 C -0.17 -7.91 6.19 23.30 0.14 -7.77 15 4 C -0.10 -4.24 9.10 22.12 0.20 -4.04 15 5 C -0.19 -8.49 9.71 22.47 0.22 -8.27 15 6 C 0.06 3.30 5.57 -21.31 -0.12 3.19 15 7 C -0.48 -23.87 9.03 23.37 0.21 -23.66 15 8 H 0.09 4.16 7.91 -2.91 -0.02 4.13 15 9 C 0.04 1.65 5.13 85.21 0.44 2.08 15 10 N -0.82 -40.46 10.97 21.81 0.24 -40.22 15 11 Si 0.98 35.53 29.59 68.60 2.03 37.56 15 12 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 13 H -0.27 -9.34 7.11 99.48 0.71 -8.63 15 14 H -0.26 -8.90 7.11 99.48 0.71 -8.20 15 15 C -0.11 -5.74 8.24 23.01 0.19 -5.55 15 16 C -0.12 -5.66 5.89 -20.01 -0.12 -5.78 15 17 C 0.52 23.22 8.25 70.22 0.58 23.80 15 18 O -0.52 -23.64 14.54 19.77 0.29 -23.35 15 19 O -0.51 -18.84 12.67 -56.75 -0.72 -19.56 15 20 H 0.12 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.08 2.20 7.53 -2.40 -0.02 2.18 15 22 H 0.08 2.18 7.53 -2.40 -0.02 2.16 15 23 H 0.14 4.73 5.45 -2.91 -0.02 4.71 15 24 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 25 H 0.29 13.18 8.30 -92.71 -0.77 12.41 15 26 H 0.12 6.63 5.72 -2.91 -0.02 6.62 15 27 H 0.42 10.41 9.11 -74.06 -0.67 9.73 15 Total: -1.00 -60.54 252.50 4.03 -56.51 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.54 Total: 24.07 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 2.76 Total: -29.66 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.24 Total: -40.22 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.43 Total: -42.91 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -1.11 Total: -5.36 kcal Total: -60.54 4.03 -56.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238411572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.434 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds