Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41214 * 120.80401 * 2 1 4 4 C 1.40796 * 120.73436 * 0.03710 * 3 2 1 5 5 H 1.08005 * 120.00205 * 314.94482 * 4 3 2 6 6 C 1.40264 * 120.00398 * 134.93809 * 4 3 2 7 7 N 1.30647 * 120.00407 * 154.82072 * 6 4 3 8 8 Si 1.86804 * 119.99858 * 334.82199 * 6 4 3 9 9 H 1.48499 * 109.46778 * 94.67846 * 8 6 4 10 10 H 1.48496 * 109.47194 * 214.67943 * 8 6 4 11 11 H 1.48497 * 109.47021 * 334.68483 * 8 6 4 12 12 C 1.41954 * 118.53928 * 180.26187 * 3 2 1 13 13 C 1.43211 * 120.00038 * 179.78162 * 12 3 2 14 14 N 4.83901 * 136.54191 * 359.75002 * 2 1 3 15 15 N 1.32712 * 120.00211 * 359.49667 * 12 3 2 16 16 C 1.31593 * 121.72498 * 0.26033 * 15 12 3 17 17 C 1.36833 * 120.80649 * 179.76522 * 2 1 3 18 18 C 1.50706 * 120.09087 * 359.97438 * 17 2 1 19 19 F 1.39899 * 109.46652 * 209.98077 * 18 17 2 20 20 F 1.39902 * 109.47307 * 329.97673 * 18 17 2 21 21 H 1.08997 * 109.47382 * 270.23709 * 1 2 3 22 22 H 1.09000 * 109.46848 * 30.23797 * 1 2 3 23 23 H 1.08998 * 109.47013 * 150.23289 * 1 2 3 24 24 H 0.96996 * 120.00444 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.23657 * 179.97438 * 16 15 12 26 26 H 1.08998 * 109.47097 * 89.98145 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2302 1.2129 0.0000 4 6 1.5592 2.4507 0.0008 5 1 0.7206 2.6108 -0.6607 6 6 1.9797 3.4759 0.8607 7 7 1.7342 4.7232 0.5593 8 14 2.8908 3.0579 2.4370 9 1 4.3544 3.1325 2.1973 10 1 2.5131 4.0252 3.4985 11 1 2.5293 1.6836 2.8681 12 6 3.6486 1.1568 -0.0057 13 6 4.4131 2.3678 -0.0106 14 7 5.0196 3.3284 -0.0145 15 7 4.2663 -0.0178 -0.0008 16 6 3.5977 -1.1512 0.0043 17 6 2.2078 -1.1753 0.0048 18 6 1.4748 -2.4920 0.0108 19 9 2.2466 -3.4522 0.6738 20 9 0.2504 -2.3412 0.6706 21 1 -0.3634 0.0043 1.0276 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 2.0253 5.4322 1.1538 25 1 4.1414 -2.0843 0.0078 26 1 1.2974 -2.8138 -1.0154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238444189.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -41.554161 kcal Electronic energy + Delta-G solvation = -16558.823840 eV Core-core repulsion = 13466.358432 eV Total energy + Delta-G solvation = -3092.465408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73296 -46.74846 -39.33695 -35.66949 -34.29140 -33.18290 -31.54189 -28.00031 -26.41632 -25.15056 -22.26046 -21.17715 -18.12930 -17.76398 -17.24153 -17.03231 -16.26728 -15.35386 -15.29451 -13.78586 -13.63688 -13.53181 -13.36024 -13.26535 -12.92666 -12.57454 -12.25351 -12.09382 -11.87178 -11.81952 -11.68578 -11.39618 -11.17172 -10.64993 -10.43222 -10.23875 -9.41005 -8.78631 -8.63248 -8.05277 -7.35649 -4.95640 1.47796 2.16045 2.94479 3.01211 3.08197 3.67709 3.70182 3.74771 4.10746 4.25398 4.51089 4.81623 5.00732 5.01983 5.26190 5.60778 5.69539 6.00508 6.21625 6.24055 6.33638 6.61922 6.82223 6.87116 7.03604 7.29898 7.81245 7.96807 8.22402 8.55408 8.87797 9.62164 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.010079 C = 0.008736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.341611 B = 2777.435918 C = 3204.279006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.073 4.073 3 C 0.072 3.928 4 C -0.427 4.427 5 H 0.111 0.889 6 C 0.093 3.907 7 N -0.760 5.760 8 Si 0.870 3.130 9 H -0.243 1.243 10 H -0.271 1.271 11 H -0.245 1.245 12 C 0.042 3.958 13 C 0.300 3.700 14 N -0.453 5.453 15 N -0.423 5.423 16 C 0.019 3.981 17 C -0.182 4.182 18 C 0.319 3.681 19 F -0.204 7.204 20 F -0.199 7.199 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.294 0.706 25 H 0.145 0.855 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -9.699 -0.098 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 C 0.065 3.935 4 C -0.453 4.453 5 H 0.129 0.871 6 C -0.133 4.133 7 N -0.380 5.380 8 Si 0.692 3.308 9 H -0.167 1.167 10 H -0.197 1.197 11 H -0.168 1.168 12 C -0.095 4.095 13 C -0.013 4.013 14 N -0.132 5.132 15 N -0.131 5.131 16 C -0.147 4.147 17 C -0.186 4.186 18 C 0.265 3.735 19 F -0.186 7.186 20 F -0.181 7.181 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.162 0.838 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.081 -7.887 -0.054 8.157 hybrid contribution -0.793 -0.380 0.843 1.219 sum -2.874 -8.267 0.790 8.788 Atomic orbital electron populations 1.20840 0.90581 1.02112 1.02383 1.19970 0.96190 0.91201 1.00764 1.18068 0.90276 0.93525 0.91617 1.19409 1.14532 0.93028 1.18365 0.87113 1.26147 0.93114 0.93927 1.00122 1.69598 1.32563 1.00693 1.35146 0.86949 0.82223 0.81081 0.80539 1.16697 1.19663 1.16818 1.16607 0.88894 0.86218 1.17764 1.24683 0.91683 0.92169 0.92771 1.81027 1.09802 1.10902 1.11492 1.66983 1.40728 0.97445 1.07951 1.21557 0.89316 0.95181 1.08641 1.20801 0.96400 0.93586 1.07803 1.20248 0.75399 0.85680 0.92155 1.92956 1.75899 1.65817 1.83883 1.92962 1.45084 1.95992 1.84034 0.91230 0.91204 0.91917 0.89459 0.83765 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 8.08 36.01 0.29 -1.42 15 2 C -0.07 -1.44 5.91 -104.00 -0.61 -2.06 15 3 C 0.07 1.65 4.60 -106.38 -0.49 1.16 15 4 C -0.43 -10.21 8.24 -37.85 -0.31 -10.52 15 5 H 0.11 2.65 7.18 -52.48 -0.38 2.28 15 6 C 0.09 2.27 4.45 -17.29 -0.08 2.19 15 7 N -0.76 -18.94 13.92 55.56 0.77 -18.17 15 8 Si 0.87 19.96 24.81 -169.99 -4.22 15.75 15 9 H -0.24 -5.86 5.46 56.52 0.31 -5.55 15 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 11 H -0.25 -5.64 7.11 56.52 0.40 -5.24 15 12 C 0.04 1.00 5.61 -84.13 -0.47 0.53 15 13 C 0.30 7.50 10.54 -22.47 -0.24 7.26 15 14 N -0.45 -11.57 17.36 41.84 0.73 -10.84 15 15 N -0.42 -9.41 10.27 -10.40 -0.11 -9.52 15 16 C 0.02 0.37 10.55 -17.37 -0.18 0.18 15 17 C -0.18 -3.27 5.72 -104.84 -0.60 -3.87 15 18 C 0.32 4.52 5.22 36.01 0.19 4.71 15 19 F -0.20 -3.02 16.48 2.25 0.04 -2.98 15 20 F -0.20 -2.99 13.83 2.25 0.03 -2.96 15 21 H 0.07 1.15 8.06 -51.93 -0.42 0.73 15 22 H 0.07 1.17 6.71 -51.93 -0.35 0.82 15 23 H 0.06 0.88 6.09 -51.93 -0.32 0.57 15 24 H 0.29 6.81 8.29 -40.82 -0.34 6.47 15 25 H 0.15 2.34 7.58 -52.49 -0.40 1.94 15 26 H 0.12 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 237.32 15.07 3.58 3.58 Total: -1.00 -26.47 237.32 -3.19 -29.66 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -1.51 Total: -2.69 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.83 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.39 Total: -38.53 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.07 Total: -5.94 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.22 Total: 15.75 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.47 -3.19 -29.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444189.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.890 kcal (2) G-P(sol) polarization free energy of solvation -26.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds