Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41214 * 120.80401 * 2 1 4 4 C 1.40796 * 120.73436 * 0.03710 * 3 2 1 5 5 H 1.08005 * 120.00205 * 314.94482 * 4 3 2 6 6 C 1.40264 * 120.00398 * 134.93809 * 4 3 2 7 7 N 1.30647 * 120.00407 * 154.82072 * 6 4 3 8 8 Si 1.86804 * 119.99858 * 334.82199 * 6 4 3 9 9 H 1.48499 * 109.46778 * 94.67846 * 8 6 4 10 10 H 1.48496 * 109.47194 * 214.67943 * 8 6 4 11 11 H 1.48497 * 109.47021 * 334.68483 * 8 6 4 12 12 C 1.41954 * 118.53928 * 180.26187 * 3 2 1 13 13 C 1.43211 * 120.00038 * 179.78162 * 12 3 2 14 14 N 4.83901 * 136.54191 * 359.75002 * 2 1 3 15 15 N 1.32712 * 120.00211 * 359.49667 * 12 3 2 16 16 C 1.31593 * 121.72498 * 0.26033 * 15 12 3 17 17 C 1.36833 * 120.80649 * 179.76522 * 2 1 3 18 18 C 1.50706 * 120.09087 * 359.97438 * 17 2 1 19 19 F 1.39899 * 109.46652 * 209.98077 * 18 17 2 20 20 F 1.39902 * 109.47307 * 329.97673 * 18 17 2 21 21 H 1.08997 * 109.47382 * 270.23709 * 1 2 3 22 22 H 1.09000 * 109.46848 * 30.23797 * 1 2 3 23 23 H 1.08998 * 109.47013 * 150.23289 * 1 2 3 24 24 H 0.96996 * 120.00444 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.23657 * 179.97438 * 16 15 12 26 26 H 1.08998 * 109.47097 * 89.98145 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2302 1.2129 0.0000 4 6 1.5592 2.4507 0.0008 5 1 0.7206 2.6108 -0.6607 6 6 1.9797 3.4759 0.8607 7 7 1.7342 4.7232 0.5593 8 14 2.8908 3.0579 2.4370 9 1 4.3544 3.1325 2.1973 10 1 2.5131 4.0252 3.4985 11 1 2.5293 1.6836 2.8681 12 6 3.6486 1.1568 -0.0057 13 6 4.4131 2.3678 -0.0106 14 7 5.0196 3.3284 -0.0145 15 7 4.2663 -0.0178 -0.0008 16 6 3.5977 -1.1512 0.0043 17 6 2.2078 -1.1753 0.0048 18 6 1.4748 -2.4920 0.0108 19 9 2.2466 -3.4522 0.6738 20 9 0.2504 -2.3412 0.6706 21 1 -0.3634 0.0043 1.0276 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 2.0253 5.4322 1.1538 25 1 4.1414 -2.0843 0.0078 26 1 1.2974 -2.8138 -1.0154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238444189.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -58.017072 kcal Electronic energy + Delta-G solvation = -16559.537726 eV Core-core repulsion = 13466.358432 eV Total energy + Delta-G solvation = -3093.179293 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86283 -47.87853 -40.99977 -37.54757 -36.04682 -34.80686 -33.21408 -29.45011 -28.05761 -26.63482 -23.80780 -22.80249 -19.84223 -19.43034 -18.41486 -18.30273 -17.68721 -17.00794 -16.85229 -15.50193 -15.35402 -15.12346 -14.72752 -14.56135 -14.41687 -14.08141 -13.79631 -13.77231 -13.51640 -13.39510 -13.32848 -13.16399 -12.46541 -12.42450 -12.18627 -11.71651 -11.22812 -10.43087 -10.19232 -9.76760 -9.17852 -6.77375 -0.20113 0.49726 1.13021 1.15604 1.24111 1.79108 1.89410 1.95113 2.41095 2.85609 3.04796 3.26426 3.44889 3.79548 4.10661 4.15409 4.20997 4.43753 4.64966 4.81931 4.99138 5.00614 5.24212 5.40870 5.48030 5.66981 6.01934 6.24049 6.42814 6.66149 7.20416 7.84775 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.010079 C = 0.008736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.341611 B = 2777.435918 C = 3204.279006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C 0.065 3.935 4 C -0.450 4.450 5 H 0.102 0.898 6 C 0.075 3.925 7 N -0.795 5.795 8 Si 0.896 3.104 9 H -0.264 1.264 10 H -0.256 1.256 11 H -0.247 1.247 12 C 0.017 3.983 13 C 0.301 3.699 14 N -0.480 5.480 15 N -0.449 5.449 16 C 0.043 3.957 17 C -0.180 4.180 18 C 0.325 3.675 19 F -0.205 7.205 20 F -0.202 7.202 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.297 0.703 25 H 0.181 0.819 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -12.795 -0.228 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 C 0.058 3.942 4 C -0.478 4.478 5 H 0.119 0.881 6 C -0.147 4.147 7 N -0.418 5.418 8 Si 0.717 3.283 9 H -0.189 1.189 10 H -0.180 1.180 11 H -0.170 1.170 12 C -0.117 4.117 13 C -0.011 4.011 14 N -0.160 5.160 15 N -0.158 5.158 16 C -0.125 4.125 17 C -0.184 4.184 18 C 0.272 3.728 19 F -0.186 7.186 20 F -0.183 7.183 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.197 0.803 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.892 -10.958 -0.172 11.335 hybrid contribution -0.503 0.268 0.843 1.017 sum -3.394 -10.690 0.670 11.236 Atomic orbital electron populations 1.20920 0.88347 1.03497 1.02938 1.20369 0.97895 0.90659 0.99084 1.18262 0.90116 0.94487 0.91306 1.19367 1.15054 0.93921 1.19507 0.88052 1.26434 0.93257 0.93973 1.01043 1.69620 1.34955 1.01119 1.36070 0.86573 0.80420 0.81130 0.80149 1.18930 1.18032 1.16986 1.16733 0.89211 0.86355 1.19417 1.25131 0.91348 0.92446 0.92198 1.80991 1.10698 1.11543 1.12740 1.67032 1.41455 0.97748 1.09558 1.22328 0.90350 0.95382 1.04479 1.21247 0.96279 0.95347 1.05495 1.20516 0.74496 0.83356 0.94467 1.92965 1.76016 1.65447 1.84217 1.92964 1.45078 1.95903 1.84394 0.90923 0.91817 0.88613 0.89194 0.80259 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.05 8.08 71.24 0.58 -2.47 15 2 C -0.07 -2.63 5.91 -19.46 -0.11 -2.74 15 3 C 0.07 2.94 4.60 -21.00 -0.10 2.84 15 4 C -0.45 -21.84 8.24 23.39 0.19 -21.65 15 5 H 0.10 4.98 7.18 -2.91 -0.02 4.96 15 6 C 0.08 3.76 4.45 85.36 0.38 4.14 15 7 N -0.80 -40.85 13.92 21.88 0.30 -40.54 15 8 Si 0.90 41.27 24.81 68.60 1.70 42.97 15 9 H -0.26 -13.03 5.46 99.48 0.54 -12.49 15 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 11 H -0.25 -11.21 7.11 99.48 0.71 -10.50 15 12 C 0.02 0.80 5.61 41.18 0.23 1.03 15 13 C 0.30 15.30 10.54 88.34 0.93 16.23 15 14 N -0.48 -25.15 17.36 19.01 0.33 -24.82 15 15 N -0.45 -19.18 10.27 -186.82 -1.92 -21.10 15 16 C 0.04 1.46 10.55 84.91 0.90 2.36 15 17 C -0.18 -5.69 5.72 -20.01 -0.11 -5.81 15 18 C 0.33 7.32 5.22 71.24 0.37 7.70 15 19 F -0.21 -4.94 16.48 44.97 0.74 -4.20 15 20 F -0.20 -5.00 13.83 44.97 0.62 -4.37 15 21 H 0.07 2.19 8.06 -2.39 -0.02 2.17 15 22 H 0.06 2.02 6.71 -2.39 -0.02 2.01 15 23 H 0.10 2.25 6.09 -2.39 -0.01 2.24 15 24 H 0.30 14.22 8.29 -92.71 -0.77 13.45 15 25 H 0.18 4.86 7.58 -2.91 -0.02 4.83 15 26 H 0.17 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -57.89 237.32 6.11 -51.78 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: 1.08 Total: -1.33 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 3.25 Total: 1.62 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.28 Total: -86.47 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 1.36 Total: -8.57 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.70 Total: 42.97 kcal Total: -57.89 6.11 -51.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444189.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.234 kcal (2) G-P(sol) polarization free energy of solvation -57.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds