Wall clock time and date at job start Mon Mar 30 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41082 * 120.45777 * 2 1 4 4 C 1.41502 * 120.98971 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99871 * 28.70684 * 4 3 2 6 6 C 1.40067 * 120.00106 * 208.71495 * 4 3 2 7 7 N 1.30726 * 119.99798 * 196.87453 * 6 4 3 8 8 Si 1.86793 * 120.00247 * 16.87876 * 6 4 3 9 9 H 1.48498 * 109.47102 * 270.00239 * 8 6 4 10 10 H 1.48499 * 109.47286 * 29.99812 * 8 6 4 11 11 H 1.48498 * 109.47539 * 149.99922 * 8 6 4 12 12 C 1.40925 * 118.02365 * 180.27612 * 3 2 1 13 13 C 1.39009 * 118.74859 * 359.47952 * 12 3 2 14 14 C 1.43208 * 119.62742 * 180.29546 * 13 12 3 15 15 N 4.81287 * 133.72317 * 359.97438 * 3 1 2 16 16 N 1.32961 * 120.75284 * 0.53804 * 13 12 3 17 17 C 1.31756 * 122.20822 * 359.73247 * 16 13 12 18 18 C 1.50696 * 119.40987 * 180.02562 * 17 16 13 19 19 F 1.39898 * 109.47132 * 119.98123 * 18 17 16 20 20 F 1.39904 * 109.46619 * 239.98057 * 18 17 16 21 21 H 1.09006 * 109.47258 * 89.99718 * 1 2 3 22 22 H 1.08998 * 109.47213 * 209.99701 * 1 2 3 23 23 H 1.08998 * 109.47100 * 330.00394 * 1 2 3 24 24 H 0.97000 * 120.00093 * 355.48826 * 7 6 4 25 25 H 1.08009 * 120.62531 * 179.74898 * 12 3 2 26 26 H 1.08996 * 109.47321 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2222 1.2161 0.0000 4 6 1.5458 2.4591 0.0005 5 1 0.5673 2.5412 0.4502 6 6 2.1453 3.5828 -0.5822 7 7 1.6982 4.7796 -0.3052 8 14 3.5835 3.3715 -1.7552 9 1 4.8553 3.3988 -0.9891 10 1 3.4592 2.0712 -2.4617 11 1 3.5796 4.4763 -2.7475 12 6 3.6301 1.1563 -0.0060 13 6 4.2464 -0.0897 -0.0005 14 6 5.6761 -0.1724 -0.0001 15 7 6.8101 -0.2380 0.0016 16 7 3.5236 -1.2057 -0.0006 17 6 2.2061 -1.1891 -0.0005 18 6 1.4496 -2.4924 0.0000 19 9 0.6455 -2.5644 1.1426 20 9 0.6448 -2.5648 -1.1421 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 0.9110 4.8865 0.2515 25 1 4.2193 2.0615 -0.0103 26 1 2.1560 -3.3225 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238444604.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:52 Heat of formation + Delta-G solvation = -57.279905 kcal Electronic energy + Delta-G solvation = -16344.064167 eV Core-core repulsion = 13250.916839 eV Total energy + Delta-G solvation = -3093.147327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.69431 -46.62550 -39.39766 -36.12515 -34.66370 -32.70975 -31.84822 -27.93606 -26.49442 -25.17387 -22.12059 -21.43750 -19.13496 -17.76248 -17.11500 -16.87272 -16.15300 -15.47181 -14.86661 -14.20009 -13.78059 -13.55729 -13.28778 -13.20403 -13.01843 -12.64408 -12.58151 -12.42255 -12.10369 -11.69659 -11.62592 -11.56951 -11.10604 -10.54618 -10.41984 -9.87295 -9.63735 -8.87772 -8.58736 -8.24569 -7.71565 -5.10860 1.40316 2.03064 2.93410 3.00597 3.06428 3.26987 3.41633 3.70125 3.90694 4.24484 4.34552 4.59759 4.84015 5.10905 5.48057 5.70164 5.81367 5.98588 6.19090 6.25090 6.33593 6.58447 6.74297 7.01319 7.11951 7.17093 7.76370 7.84706 7.93265 8.22467 8.58786 9.58882 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.011276 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.748535 B = 2482.577302 C = 3488.504784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.163 4.163 3 C 0.106 3.894 4 C -0.479 4.479 5 H 0.094 0.906 6 C 0.044 3.956 7 N -0.786 5.786 8 Si 1.059 2.941 9 H -0.270 1.270 10 H -0.258 1.258 11 H -0.279 1.279 12 C -0.226 4.226 13 C 0.202 3.798 14 C 0.290 3.710 15 N -0.432 5.432 16 N -0.527 5.527 17 C 0.065 3.935 18 C 0.329 3.671 19 F -0.198 7.198 20 F -0.199 7.199 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.293 0.707 25 H 0.127 0.873 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -5.918 -0.665 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.168 4.168 3 C 0.098 3.902 4 C -0.509 4.509 5 H 0.111 0.889 6 C -0.179 4.179 7 N -0.407 5.407 8 Si 0.883 3.117 9 H -0.197 1.197 10 H -0.182 1.182 11 H -0.205 1.205 12 C -0.252 4.252 13 C 0.066 3.934 14 C -0.027 4.027 15 N -0.109 5.109 16 N -0.243 5.243 17 C -0.070 4.070 18 C 0.274 3.726 19 F -0.180 7.180 20 F -0.180 7.180 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.105 0.895 25 H 0.145 0.855 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.511 -5.940 -1.517 6.151 hybrid contribution -2.164 0.151 1.079 2.423 sum -1.653 -5.788 -0.438 6.036 Atomic orbital electron populations 1.20657 0.91279 1.02224 1.01677 1.20666 0.96562 0.92448 1.07169 1.17677 0.90336 0.93177 0.89025 1.20813 1.05310 0.92970 1.31797 0.88859 1.27371 1.02284 0.91146 0.97122 1.70489 1.19181 1.24058 1.26939 0.83767 0.74064 0.77664 0.76161 1.19659 1.18244 1.20496 1.22030 0.95632 0.96182 1.11400 1.15740 0.84634 0.90097 1.02889 1.25406 0.92138 0.92248 0.92875 1.81107 1.11976 1.08419 1.09420 1.66726 1.06298 1.29725 1.21512 1.20477 0.90075 0.93079 1.03363 1.19983 0.84039 0.97628 0.70930 1.92935 1.76242 1.97258 1.51536 1.92981 1.76218 1.97410 1.51379 0.91875 0.92157 0.91519 0.89468 0.85522 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 8.61 36.01 0.31 -1.55 15 2 C -0.16 -3.40 5.92 -103.65 -0.61 -4.01 15 3 C 0.11 2.37 5.17 -106.56 -0.55 1.82 15 4 C -0.48 -11.01 8.88 -37.65 -0.33 -11.34 15 5 H 0.09 2.16 6.61 -52.49 -0.35 1.81 15 6 C 0.04 1.02 5.45 -17.34 -0.09 0.93 15 7 N -0.79 -18.53 13.65 55.55 0.76 -17.77 15 8 Si 1.06 21.63 24.90 -169.99 -4.23 17.40 15 9 H -0.27 -5.30 6.45 56.52 0.36 -4.94 15 10 H -0.26 -5.25 6.98 56.52 0.39 -4.85 15 11 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 12 C -0.23 -4.92 7.04 -38.28 -0.27 -5.19 15 13 C 0.20 4.24 6.58 -85.16 -0.56 3.68 15 14 C 0.29 5.85 15.52 -22.47 -0.35 5.50 15 15 N -0.43 -8.78 18.54 41.83 0.78 -8.00 15 16 N -0.53 -10.89 10.13 -7.57 -0.08 -10.96 15 17 C 0.07 1.29 6.27 -82.74 -0.52 0.77 15 18 C 0.33 5.38 5.04 36.00 0.18 5.56 15 19 F -0.20 -3.27 15.33 2.25 0.03 -3.24 15 20 F -0.20 -3.30 16.42 2.25 0.04 -3.26 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.06 1.03 5.50 -51.93 -0.29 0.74 15 23 H 0.07 1.22 6.41 -51.93 -0.33 0.89 15 24 H 0.29 6.63 8.72 -40.82 -0.36 6.28 15 25 H 0.13 2.69 4.40 -52.48 -0.23 2.46 15 26 H 0.12 1.64 8.10 -51.93 -0.42 1.22 15 LS Contribution 241.87 15.07 3.64 3.64 Total: -1.00 -23.76 241.87 -3.09 -26.86 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -1.24 Total: -0.85 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.80 Total: -3.83 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 1.46 Total: -36.73 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.07 Total: -6.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.23 Total: 17.40 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -23.76 -3.09 -26.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444604.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.422 kcal (2) G-P(sol) polarization free energy of solvation -23.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds