Wall clock time and date at job start Mon Mar 30 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41269 * 120.79672 * 2 1 4 4 C 1.40966 * 120.54820 * 359.97438 * 3 2 1 5 5 H 1.08007 * 120.00007 * 332.53896 * 4 3 2 6 6 C 1.40229 * 120.00329 * 152.53709 * 4 3 2 7 7 N 1.30662 * 119.99860 * 346.62901 * 6 4 3 8 8 Si 1.86793 * 120.00270 * 166.62643 * 6 4 3 9 9 H 1.48496 * 109.47227 * 89.99941 * 8 6 4 10 10 H 1.48503 * 109.47335 * 210.00150 * 8 6 4 11 11 H 1.48508 * 109.47227 * 330.00125 * 8 6 4 12 12 C 1.41102 * 118.90671 * 179.97438 * 3 2 1 13 13 N 1.31117 * 120.42004 * 0.02960 * 12 3 2 14 14 C 1.33169 * 121.73003 * 359.96687 * 13 12 3 15 15 C 1.43200 * 119.45643 * 180.02562 * 14 13 12 16 16 N 4.78120 * 135.57050 * 179.97438 * 2 1 3 17 17 C 1.36683 * 120.79345 * 180.26087 * 2 1 3 18 18 C 1.50697 * 120.27639 * 0.02562 * 17 2 1 19 19 F 1.39902 * 109.47238 * 293.66287 * 18 17 2 20 20 F 1.39905 * 109.47027 * 53.66247 * 18 17 2 21 21 H 1.09000 * 109.46895 * 93.90684 * 1 2 3 22 22 H 1.08992 * 109.47105 * 213.91146 * 1 2 3 23 23 H 1.09001 * 109.46930 * 333.90995 * 1 2 3 24 24 H 0.96998 * 119.99831 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.78842 * 179.97438 * 12 3 2 26 26 H 1.09000 * 109.47256 * 173.66103 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2303 1.2135 0.0000 4 6 1.5543 2.4505 -0.0005 5 1 0.5672 2.5263 -0.4323 6 6 2.1634 3.5827 0.5595 7 7 3.2269 3.4500 1.3069 8 14 1.4545 5.2805 0.2369 9 1 0.4544 5.6066 1.2851 10 1 2.5466 6.2864 0.2646 11 1 0.7988 5.2982 -1.0955 12 6 3.6406 1.1670 0.0006 13 7 4.2668 0.0150 0.0005 14 6 3.6062 -1.1413 0.0005 15 6 4.3395 -2.3713 0.0010 16 7 4.9213 -3.3470 0.0015 17 6 2.2068 -1.1741 -0.0053 18 6 1.4778 -2.4930 -0.0119 19 9 0.7884 -2.6509 1.1952 20 9 0.5686 -2.5180 -1.0750 21 1 -0.3633 -0.0700 -1.0253 22 1 -0.3633 -0.8528 0.5733 23 1 -0.3633 0.9230 0.4520 24 1 3.6484 4.2332 1.6940 25 1 4.2077 2.0860 0.0001 26 1 2.1960 -3.3046 -0.1290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238445110.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:23 Heat of formation + Delta-G solvation = -71.899654 kcal Electronic energy + Delta-G solvation = -16350.792979 eV Core-core repulsion = 13257.011692 eV Total energy + Delta-G solvation = -3093.781287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.05906 -47.98647 -40.75911 -37.58939 -36.09262 -34.80750 -32.74571 -29.37283 -28.06530 -26.65629 -23.97886 -22.63467 -19.73462 -19.19944 -18.83931 -18.24678 -17.67731 -16.98240 -16.49393 -15.45149 -15.36356 -14.92124 -14.75031 -14.38198 -14.20821 -14.10319 -13.88047 -13.58140 -13.36916 -13.25437 -13.13554 -13.01269 -12.81528 -12.77664 -12.12843 -11.60670 -11.29238 -10.30197 -10.19330 -9.68584 -8.94794 -6.63269 0.01248 0.69487 1.43320 1.48086 1.61229 1.62349 1.99105 2.16347 2.68494 2.71301 2.98248 3.18566 3.41841 3.62814 4.06237 4.30710 4.35571 4.64679 4.77253 4.92950 4.96946 5.01880 5.27550 5.37503 5.60505 5.83660 6.16408 6.43421 6.50040 6.54262 7.43738 8.01318 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.008483 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.586121 B = 3299.899104 C = 3989.955874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.138 4.138 3 C 0.051 3.949 4 C -0.409 4.409 5 H 0.112 0.888 6 C 0.035 3.965 7 N -0.784 5.784 8 Si 0.995 3.005 9 H -0.259 1.259 10 H -0.266 1.266 11 H -0.249 1.249 12 C 0.045 3.955 13 N -0.451 5.451 14 C 0.005 3.995 15 C 0.301 3.699 16 N -0.474 5.474 17 C -0.132 4.132 18 C 0.324 3.676 19 F -0.201 7.201 20 F -0.196 7.196 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.306 0.694 25 H 0.156 0.844 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 2.277 -1.608 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.045 3.955 4 C -0.436 4.436 5 H 0.129 0.871 6 C -0.187 4.187 7 N -0.406 5.406 8 Si 0.814 3.186 9 H -0.184 1.184 10 H -0.191 1.191 11 H -0.173 1.173 12 C -0.126 4.126 13 N -0.160 5.160 14 C -0.128 4.128 15 C -0.011 4.011 16 N -0.154 5.154 17 C -0.138 4.138 18 C 0.270 3.730 19 F -0.182 7.182 20 F -0.177 7.177 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.173 0.827 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.578 0.756 -1.443 4.859 hybrid contribution -0.939 0.994 0.166 1.377 sum -5.516 1.751 -1.277 5.927 Atomic orbital electron populations 1.20616 0.89353 1.02875 1.02166 1.19975 0.97173 0.91232 1.06034 1.18861 0.93291 0.93623 0.89727 1.20277 1.03475 0.91825 1.28046 0.87055 1.27128 0.94110 1.05938 0.91561 1.69678 1.16312 1.35922 1.18723 0.84956 0.78984 0.74064 0.80584 1.18362 1.19065 1.17260 1.23012 0.92535 0.93328 1.03727 1.67045 1.41357 0.98053 1.09581 1.15401 0.87426 0.86906 1.23074 1.25338 0.92116 0.92052 0.91586 1.81104 1.08068 1.12252 1.14000 1.20306 0.93092 0.94969 1.05398 1.20199 0.84472 0.96896 0.71478 1.92958 1.81956 1.96609 1.46679 1.92971 1.70222 1.97619 1.56910 0.90915 0.92171 0.90494 0.88209 0.82694 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 8.25 71.24 0.59 -2.71 15 2 C -0.14 -5.85 5.90 -19.48 -0.11 -5.96 15 3 C 0.05 2.32 5.57 -21.16 -0.12 2.21 15 4 C -0.41 -17.01 8.15 23.42 0.19 -16.82 15 5 H 0.11 4.19 6.94 -2.91 -0.02 4.17 15 6 C 0.03 1.35 5.22 85.35 0.45 1.79 15 7 N -0.78 -33.00 10.91 21.87 0.24 -32.76 15 8 Si 1.00 29.09 29.58 68.60 2.03 31.12 15 9 H -0.26 -7.41 7.11 99.48 0.71 -6.71 15 10 H -0.27 -7.61 7.11 99.48 0.71 -6.90 15 11 H -0.25 -7.08 7.11 99.48 0.71 -6.37 15 12 C 0.04 2.13 9.86 85.50 0.84 2.97 15 13 N -0.45 -21.78 10.26 -186.73 -1.92 -23.69 15 14 C 0.00 0.22 6.60 40.61 0.27 0.49 15 15 C 0.30 12.89 13.71 88.33 1.21 14.10 15 16 N -0.47 -20.12 18.54 19.00 0.35 -19.77 15 17 C -0.13 -5.52 5.39 -19.81 -0.11 -5.62 15 18 C 0.32 11.57 4.78 71.24 0.34 11.91 15 19 F -0.20 -7.21 15.92 44.97 0.72 -6.50 15 20 F -0.20 -6.75 16.02 44.97 0.72 -6.03 15 21 H 0.07 2.35 8.12 -2.39 -0.02 2.33 15 22 H 0.06 2.04 6.07 -2.39 -0.01 2.02 15 23 H 0.08 2.59 6.71 -2.39 -0.02 2.58 15 24 H 0.31 11.41 8.29 -92.71 -0.77 10.65 15 25 H 0.16 7.39 6.23 -2.91 -0.02 7.38 15 26 H 0.12 3.85 6.48 -2.39 -0.02 3.84 15 Total: -1.00 -49.21 244.80 6.94 -42.28 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.25 Total: 12.98 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 3.55 Total: 2.37 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.32 Total: -76.22 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 1.44 Total: -12.52 kcal Atomic # 14 Polarization: 29.09 SS G_CDS: 2.03 Total: 31.12 kcal Total: -49.21 6.94 -42.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238445110.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.624 kcal (2) G-P(sol) polarization free energy of solvation -49.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds