Wall clock time and date at job start Mon Mar 30 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40885 * 120.96650 * 2 1 4 4 C 1.41449 * 120.59301 * 0.02562 * 3 2 1 5 5 H 1.07993 * 119.99897 * 24.99022 * 4 3 2 6 6 C 1.39932 * 119.99921 * 204.98536 * 4 3 2 7 7 N 1.30836 * 119.99865 * 15.18730 * 6 4 3 8 8 Si 1.86803 * 120.00206 * 195.18217 * 6 4 3 9 9 H 1.48500 * 109.46825 * 90.00127 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00094 * 8 6 4 11 11 H 1.48500 * 109.46919 * 330.00159 * 8 6 4 12 12 C 1.40776 * 118.81006 * 180.02562 * 3 2 1 13 13 N 1.31551 * 120.73886 * 0.02562 * 12 3 2 14 14 C 1.31859 * 122.15671 * 359.97438 * 13 12 3 15 15 C 1.50697 * 119.43898 * 180.02562 * 14 13 12 16 16 F 1.39901 * 109.47419 * 119.99711 * 15 14 13 17 17 F 1.39904 * 109.47180 * 239.99743 * 15 14 13 18 18 C 1.39462 * 120.97183 * 180.02562 * 2 1 3 19 19 C 1.43193 * 120.44372 * 359.95222 * 18 2 1 20 20 N 3.48830 * 81.57569 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46638 * 269.97147 * 1 2 3 22 22 H 1.09000 * 109.47365 * 29.97175 * 1 2 3 23 23 H 1.09000 * 109.46730 * 149.97719 * 1 2 3 24 24 H 0.96996 * 119.99925 * 179.97438 * 7 6 4 25 25 H 1.08004 * 119.63140 * 180.02562 * 12 3 2 26 26 H 1.08994 * 109.47651 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2319 1.2080 0.0000 4 6 1.5583 2.4518 0.0005 5 1 0.5559 2.5228 0.3961 6 6 2.1908 3.5903 -0.5113 7 7 3.2628 3.4662 -1.2510 8 14 1.5045 5.2872 -0.1386 9 1 2.1223 5.8083 1.1072 10 1 1.8128 6.2043 -1.2652 11 1 0.0328 5.1980 0.0385 12 6 3.6387 1.1551 -0.0006 13 7 4.2681 -0.0001 -0.0016 14 6 3.6236 -1.1505 -0.0016 15 6 4.4065 -2.4381 -0.0022 16 9 4.0857 -3.1795 1.1400 17 9 4.0848 -3.1790 -1.1445 18 6 2.2247 -1.1958 -0.0005 19 6 1.5396 -2.4532 -0.0001 20 7 0.9960 -3.4507 0.0015 21 1 -0.3632 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 3.7010 4.2553 -1.6061 25 1 4.2076 2.0731 -0.0001 26 1 5.4733 -2.2148 -0.0030 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238445132.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:38 Heat of formation + Delta-G solvation = -62.341095 kcal Electronic energy + Delta-G solvation = -16266.291597 eV Core-core repulsion = 13172.924800 eV Total energy + Delta-G solvation = -3093.366797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.37762 -46.37437 -39.07122 -35.93148 -34.57125 -32.90687 -30.85204 -27.76926 -26.99419 -24.42086 -22.75950 -20.46257 -18.74195 -17.26000 -16.62874 -16.48007 -16.25242 -15.62673 -14.91194 -13.82381 -13.75499 -13.24793 -13.18993 -12.78260 -12.60179 -12.41009 -12.25952 -12.04225 -11.91658 -11.85792 -11.68853 -11.48842 -11.24518 -10.99834 -10.57497 -10.25549 -9.74369 -8.55077 -8.40011 -8.02107 -7.29450 -4.92035 1.64082 2.27131 2.83828 2.87838 2.88615 3.31437 3.58314 3.79416 4.22305 4.32183 4.67079 4.84614 5.07512 5.26678 5.75873 5.86995 5.92652 6.23109 6.27154 6.40409 6.55046 6.67330 6.81116 6.98623 7.19087 7.55135 7.87900 8.08997 8.19587 8.27346 9.14292 9.65246 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.037276 B = 0.007683 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.978583 B = 3643.669953 C = 4156.952006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.121 4.121 3 C 0.071 3.929 4 C -0.421 4.421 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.771 5.771 8 Si 0.922 3.078 9 H -0.262 1.262 10 H -0.273 1.273 11 H -0.258 1.258 12 C 0.067 3.933 13 N -0.447 5.447 14 C -0.062 4.062 15 C 0.330 3.670 16 F -0.208 7.208 17 F -0.208 7.208 18 C -0.017 4.017 19 C 0.274 3.726 20 N -0.445 5.445 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.293 0.707 25 H 0.165 0.835 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 1.760 1.378 2.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.066 3.934 4 C -0.450 4.450 5 H 0.112 0.888 6 C -0.151 4.151 7 N -0.394 5.394 8 Si 0.745 3.255 9 H -0.187 1.187 10 H -0.198 1.198 11 H -0.181 1.181 12 C -0.100 4.100 13 N -0.154 5.154 14 C -0.199 4.199 15 C 0.275 3.725 16 F -0.189 7.189 17 F -0.189 7.189 18 C -0.023 4.023 19 C -0.041 4.041 20 N -0.121 5.121 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.182 0.818 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.587 0.231 1.222 1.375 hybrid contribution -0.922 1.072 -0.012 1.414 sum -0.335 1.303 1.210 1.810 Atomic orbital electron populations 1.20517 0.91545 1.01916 1.01170 1.20142 0.95264 0.90836 1.06773 1.18397 0.93178 0.92136 0.89727 1.19763 1.01863 0.91185 1.32152 0.88806 1.26131 0.94237 1.02519 0.92237 1.69707 1.15621 1.33689 1.20385 0.86041 0.80655 0.79374 0.79380 1.18673 1.19802 1.18146 1.23186 0.92179 0.93655 1.00934 1.66735 1.40900 0.97690 1.10102 1.20302 0.88652 0.93218 1.17695 1.19961 0.99579 0.82318 0.70611 1.92960 1.94970 1.79187 1.51801 1.92965 1.94945 1.79198 1.51788 1.16305 0.92493 0.86489 1.06987 1.25857 0.92692 0.92755 0.92799 1.81051 1.09821 1.11191 1.10075 0.92325 0.90588 0.93443 0.89521 0.81773 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.10 36.01 0.33 -1.43 15 2 C -0.12 -2.64 6.01 -103.16 -0.62 -3.26 15 3 C 0.07 1.61 5.58 -106.71 -0.60 1.02 15 4 C -0.42 -9.09 8.23 -37.73 -0.31 -9.40 15 5 H 0.09 1.90 6.94 -52.49 -0.36 1.53 15 6 C 0.07 1.45 5.20 -17.34 -0.09 1.36 15 7 N -0.77 -16.54 10.86 55.55 0.60 -15.93 15 8 Si 0.92 15.39 29.59 -169.99 -5.03 10.36 15 9 H -0.26 -4.36 7.11 56.52 0.40 -3.96 15 10 H -0.27 -4.54 7.11 56.52 0.40 -4.13 15 11 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 12 C 0.07 1.54 9.88 -16.71 -0.17 1.38 15 13 N -0.45 -10.08 10.20 -8.47 -0.09 -10.17 15 14 C -0.06 -1.35 6.32 -81.94 -0.52 -1.87 15 15 C 0.33 6.39 5.12 36.00 0.18 6.57 15 16 F -0.21 -4.14 16.51 2.25 0.04 -4.10 15 17 F -0.21 -4.20 16.52 2.25 0.04 -4.16 15 18 C -0.02 -0.37 5.71 -106.87 -0.61 -0.98 15 19 C 0.27 5.97 11.75 -22.48 -0.26 5.70 15 20 N -0.44 -9.82 18.54 41.84 0.78 -9.05 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.08 1.35 6.88 -51.93 -0.36 0.99 15 23 H 0.05 0.86 7.19 -51.93 -0.37 0.48 15 24 H 0.29 5.65 8.30 -40.82 -0.34 5.31 15 25 H 0.17 3.76 6.10 -52.48 -0.32 3.44 15 26 H 0.12 1.94 8.10 -51.93 -0.42 1.52 15 LS Contribution 248.08 15.07 3.74 3.74 Total: -1.00 -24.36 248.08 -3.98 -28.34 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -1.39 Total: 1.89 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.66 Total: -0.91 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 1.29 Total: -35.15 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 0.07 Total: -8.27 kcal Atomic # 14 Polarization: 15.39 SS G_CDS: -5.03 Total: 10.36 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -24.36 -3.98 -28.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238445132.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.002 kcal (2) G-P(sol) polarization free energy of solvation -24.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds