Wall clock time and date at job start Mon Mar 30 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40841 * 120.39640 * 2 1 4 4 C 1.41437 * 119.75817 * 359.97438 * 3 2 1 5 5 H 1.07999 * 120.00329 * 359.72959 * 4 3 2 6 6 C 1.40026 * 120.00334 * 179.44798 * 4 3 2 7 7 N 1.30742 * 119.99598 * 0.28423 * 6 4 3 8 8 Si 1.86800 * 120.00391 * 180.27409 * 6 4 3 9 9 H 1.48508 * 109.46864 * 60.00572 * 8 6 4 10 10 H 1.48499 * 109.47393 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47314 * 300.00962 * 8 6 4 12 12 N 1.33345 * 120.48824 * 179.70329 * 3 2 1 13 13 C 1.32393 * 121.40549 * 0.27732 * 12 3 2 14 14 C 1.43196 * 119.61136 * 180.02562 * 13 12 3 15 15 N 4.70852 * 138.51770 * 359.65068 * 3 1 2 16 16 C 1.39894 * 120.76826 * 359.97438 * 13 12 3 17 17 C 1.38163 * 120.40495 * 180.25499 * 2 1 3 18 18 C 1.50705 * 120.65430 * 359.97438 * 17 2 1 19 19 F 1.39903 * 109.47316 * 294.02488 * 18 17 2 20 20 F 1.39893 * 109.46804 * 54.02548 * 18 17 2 21 21 H 1.08997 * 109.47676 * 84.95715 * 1 2 3 22 22 H 1.09001 * 109.47203 * 204.95930 * 1 2 3 23 23 H 1.09003 * 109.47112 * 324.95278 * 1 2 3 24 24 H 0.96999 * 119.99486 * 179.97438 * 7 6 4 25 25 H 1.08002 * 120.27724 * 180.02562 * 16 13 12 26 26 H 1.09001 * 109.46903 * 174.02851 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2196 1.2148 0.0000 4 6 1.5157 2.4416 -0.0005 5 1 0.4357 2.4446 -0.0054 6 6 2.2190 3.6524 0.0111 7 7 3.5264 3.6489 0.0169 8 14 1.2893 5.2726 0.0181 9 1 0.4303 5.3451 1.2274 10 1 2.2573 6.3987 0.0298 11 1 0.4412 5.3620 -1.1975 12 7 3.5530 1.2170 0.0060 13 6 4.2447 0.0881 0.0065 14 6 5.6759 0.1352 0.0136 15 7 6.8113 0.1725 0.0190 16 6 3.5937 -1.1501 0.0014 17 6 2.2062 -1.1916 -0.0053 18 6 1.4769 -2.5104 -0.0106 19 9 0.7818 -2.6638 1.1938 20 9 0.5729 -2.5390 -1.0778 21 1 -0.3634 0.0903 -1.0236 22 1 -0.3634 -0.9317 0.4336 23 1 -0.3633 0.8414 0.5902 24 1 4.0136 4.4876 0.0246 25 1 4.1659 -2.0661 0.0023 26 1 2.1956 -3.3225 -0.1212 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238445573.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:02 Heat of formation + Delta-G solvation = -60.899699 kcal Electronic energy + Delta-G solvation = -16235.485406 eV Core-core repulsion = 13142.181112 eV Total energy + Delta-G solvation = -3093.304293 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86417 -47.80232 -40.60995 -37.56272 -35.70837 -34.41517 -32.90516 -29.16061 -28.07985 -26.64294 -23.46020 -23.06859 -19.98074 -19.10866 -18.40274 -18.03441 -16.80959 -16.72085 -16.31555 -15.71648 -15.37064 -14.92596 -14.79973 -14.20066 -14.16265 -14.12726 -13.91342 -13.59662 -13.16674 -13.14154 -13.04617 -12.81537 -12.71585 -12.12387 -12.08690 -11.59648 -11.27824 -10.32653 -9.82617 -9.59145 -8.41661 -6.59899 0.11144 0.69146 1.44110 1.48336 1.55842 1.61715 2.01728 2.21165 2.75819 2.83255 3.11133 3.42905 3.68291 3.88954 4.26352 4.34051 4.43499 4.56986 4.83184 4.86558 4.98192 5.21205 5.28525 5.35881 5.62074 5.76339 6.15061 6.41402 6.57895 6.78294 7.82786 8.34358 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.010037 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.442805 B = 2789.045927 C = 3993.268108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.178 4.178 3 C 0.225 3.775 4 C -0.442 4.442 5 H 0.110 0.890 6 C 0.024 3.976 7 N -0.754 5.754 8 Si 0.985 3.015 9 H -0.255 1.255 10 H -0.276 1.276 11 H -0.255 1.255 12 N -0.481 5.481 13 C 0.176 3.824 14 C 0.305 3.695 15 N -0.456 5.456 16 C -0.219 4.219 17 C -0.118 4.118 18 C 0.323 3.677 19 F -0.208 7.208 20 F -0.207 7.207 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.281 0.719 25 H 0.153 0.847 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 -6.312 -0.212 9.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.185 4.185 3 C 0.099 3.901 4 C -0.472 4.472 5 H 0.127 0.873 6 C -0.199 4.199 7 N -0.375 5.375 8 Si 0.805 3.195 9 H -0.179 1.179 10 H -0.201 1.201 11 H -0.178 1.178 12 N -0.197 5.197 13 C 0.032 3.968 14 C -0.011 4.011 15 N -0.134 5.134 16 C -0.246 4.246 17 C -0.124 4.124 18 C 0.270 3.730 19 F -0.189 7.189 20 F -0.188 7.188 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.170 0.830 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.130 -5.311 -0.193 6.731 hybrid contribution -0.873 0.188 0.017 0.893 sum -5.003 -5.123 -0.176 7.163 Atomic orbital electron populations 1.20573 0.90004 1.02203 1.01880 1.21000 0.97656 0.92889 1.06928 1.18737 0.86910 0.93189 0.91268 1.20152 0.95657 0.89406 1.42035 0.87259 1.27033 0.95549 1.04868 0.92438 1.70190 1.09031 1.29727 1.28594 0.85192 0.78590 0.75221 0.80469 1.17860 1.20069 1.17849 1.68650 1.08824 1.25756 1.16427 1.16735 0.85597 0.91760 1.02660 1.25586 0.92277 0.91178 0.92067 1.81042 1.12446 1.09591 1.10326 1.21108 0.93156 0.96984 1.13318 1.20283 0.94108 0.94409 1.03643 1.20558 0.84693 0.96999 0.70796 1.92955 1.81978 1.96619 1.47359 1.92964 1.71064 1.97620 1.57138 0.91516 0.91845 0.91388 0.90873 0.82986 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 8.34 71.23 0.59 -2.60 15 2 C -0.18 -7.49 5.93 -19.25 -0.11 -7.60 15 3 C 0.23 11.12 6.55 40.34 0.26 11.39 15 4 C -0.44 -21.27 8.67 23.49 0.20 -21.07 15 5 H 0.11 4.73 6.13 -2.91 -0.02 4.72 15 6 C 0.02 1.12 5.50 85.29 0.47 1.59 15 7 N -0.75 -38.75 11.46 21.84 0.25 -38.50 15 8 Si 0.99 35.23 29.56 68.60 2.03 37.26 15 9 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 10 H -0.28 -9.74 7.11 99.48 0.71 -9.03 15 11 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 12 N -0.48 -24.84 7.77 -182.59 -1.42 -26.26 15 13 C 0.18 7.89 6.59 40.70 0.27 8.16 15 14 C 0.30 13.32 15.52 88.33 1.37 14.69 15 15 N -0.46 -20.00 18.54 19.00 0.35 -19.65 15 16 C -0.22 -8.05 9.45 22.81 0.22 -7.83 15 17 C -0.12 -4.31 5.40 -19.74 -0.11 -4.42 15 18 C 0.32 9.03 4.94 71.24 0.35 9.39 15 19 F -0.21 -6.25 15.97 44.97 0.72 -5.53 15 20 F -0.21 -6.18 15.95 44.97 0.72 -5.46 15 21 H 0.07 2.26 8.14 -2.39 -0.02 2.25 15 22 H 0.06 2.08 5.62 -2.39 -0.01 2.06 15 23 H 0.07 2.39 6.62 -2.39 -0.02 2.37 15 24 H 0.28 13.31 8.29 -92.71 -0.77 12.54 15 25 H 0.15 4.28 8.01 -2.91 -0.02 4.26 15 26 H 0.16 2.99 7.95 -2.39 -0.02 2.97 15 Total: -1.00 -57.73 248.23 7.41 -50.32 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.24 Total: 6.13 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 3.52 Total: 1.68 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -0.82 Total: -84.41 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 1.44 Total: -10.99 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -57.73 7.41 -50.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238445573.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.578 kcal (2) G-P(sol) polarization free energy of solvation -57.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds