Wall clock time and date at job start Mon Mar 30 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39508 * 120.59829 * 2 1 4 4 C 1.43201 * 120.84392 * 359.97438 * 3 2 1 5 5 N 3.49496 * 81.48487 * 359.97438 * 2 1 3 6 6 C 1.40191 * 118.30960 * 180.25838 * 3 2 1 7 7 C 1.38618 * 119.38811 * 359.43758 * 6 3 2 8 8 C 1.50699 * 119.41286 * 180.27875 * 7 6 3 9 9 F 1.39902 * 109.46970 * 209.99825 * 8 7 6 10 10 F 1.39900 * 109.47446 * 330.00034 * 8 7 6 11 11 N 1.31392 * 121.16577 * 0.25284 * 7 6 3 12 12 C 1.33628 * 121.85866 * 0.02687 * 11 7 6 13 13 C 1.41403 * 119.76500 * 179.97438 * 12 11 7 14 14 H 1.07997 * 119.99589 * 179.97438 * 13 12 11 15 15 C 1.40051 * 120.00290 * 359.97438 * 13 12 11 16 16 N 1.30733 * 119.99846 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47242 * 59.99803 * 17 15 13 19 19 H 1.48503 * 109.46927 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47202 * 299.99640 * 17 15 13 21 21 H 1.09000 * 109.47389 * 270.34911 * 1 2 3 22 22 H 1.09004 * 109.47073 * 30.34879 * 1 2 3 23 23 H 1.09002 * 109.47406 * 150.34750 * 1 2 3 24 24 H 1.08002 * 120.30850 * 179.71644 * 6 3 2 25 25 H 1.09001 * 109.47238 * 90.00363 * 8 7 6 26 26 H 0.96999 * 120.00002 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.2008 0.0000 4 6 1.5325 2.4586 -0.0005 5 7 0.9895 3.4564 -0.0015 6 6 3.6179 1.1448 -0.0056 7 6 4.2494 -0.0891 0.0010 8 6 5.7551 -0.1499 0.0014 9 9 6.1750 -1.3136 -0.6519 10 9 6.2673 0.9691 -0.6640 11 7 3.5583 -1.2066 0.0074 12 6 2.2220 -1.2095 0.0073 13 6 1.5227 -2.4385 0.0138 14 1 0.4428 -2.4452 0.0142 15 6 2.2305 -3.6470 0.0197 16 7 3.5378 -3.6388 0.0187 17 14 1.3066 -5.2704 0.0276 18 1 0.4534 -5.3603 -1.1845 19 1 2.2787 -6.3931 0.0324 20 1 0.4534 -5.3486 1.2404 21 1 -0.3634 0.0063 1.0276 22 1 -0.3633 0.8869 -0.5193 23 1 -0.3634 -0.8931 -0.5084 24 1 4.1997 2.0547 -0.0104 25 1 6.1181 -0.1592 1.0292 26 1 4.0281 -4.4758 0.0232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238445601.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:57 Heat of formation + Delta-G solvation = -61.436488 kcal Electronic energy + Delta-G solvation = -16210.213976 eV Core-core repulsion = 13116.886406 eV Total energy + Delta-G solvation = -3093.327570 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.73796 -47.74549 -40.61121 -37.68211 -35.67193 -34.39442 -32.57324 -29.50880 -28.33454 -25.53960 -24.75443 -22.19163 -20.39196 -18.74450 -18.22754 -17.73607 -17.30045 -16.58288 -16.41157 -15.68161 -15.31239 -14.92905 -14.60153 -14.17613 -14.10044 -14.08494 -13.95107 -13.67496 -13.36130 -13.22678 -12.94081 -12.78087 -12.70618 -12.29344 -12.04715 -11.53079 -11.21058 -10.17305 -9.73785 -9.59779 -8.36144 -6.55501 0.14463 0.58615 1.48889 1.54816 1.58940 1.60560 2.18534 2.25087 2.75890 2.85740 3.02006 3.39305 3.64323 3.97758 4.23322 4.27123 4.44167 4.63232 4.79643 4.88255 4.95801 5.24774 5.27371 5.36532 5.56510 5.74275 6.19594 6.42115 6.57773 6.81098 7.90330 8.38661 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.011068 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.341410 B = 2529.229483 C = 3989.687024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.179 4.179 3 C 0.017 3.983 4 C 0.293 3.707 5 N -0.459 5.459 6 C -0.247 4.247 7 C 0.065 3.935 8 C 0.331 3.669 9 F -0.203 7.203 10 F -0.205 7.205 11 N -0.476 5.476 12 C 0.225 3.775 13 C -0.435 4.435 14 H 0.110 0.890 15 C 0.024 3.976 16 N -0.736 5.736 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.256 1.256 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -0.513 1.602 1.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.188 4.188 3 C 0.008 3.992 4 C -0.021 4.021 5 N -0.135 5.135 6 C -0.273 4.273 7 C -0.082 4.082 8 C 0.276 3.724 9 F -0.184 7.184 10 F -0.186 7.186 11 N -0.189 5.189 12 C 0.101 3.899 13 C -0.465 4.465 14 H 0.128 0.872 15 C -0.200 4.200 16 N -0.357 5.357 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.180 1.180 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.220 0.080 1.569 1.587 hybrid contribution -0.187 -0.137 -0.199 0.306 sum 0.033 -0.057 1.370 1.372 Atomic orbital electron populations 1.20518 0.89808 1.02107 1.02030 1.21048 0.97382 0.91753 1.08623 1.15790 0.92467 0.85734 1.05205 1.25693 0.91902 0.92236 0.92239 1.81124 1.10110 1.11727 1.10586 1.21052 0.92398 0.98100 1.15756 1.21733 0.96024 0.90527 0.99872 1.20285 0.88071 0.70263 0.93741 1.92973 1.91020 1.50131 1.84322 1.92938 1.88063 1.53411 1.84212 1.68274 1.08273 1.26439 1.15935 1.18687 0.87438 0.92535 0.91240 1.20168 0.95722 0.89327 1.41302 0.87202 1.26980 0.95621 1.04562 0.92832 1.70181 1.08569 1.30007 1.26903 0.85212 0.78635 0.75514 0.80230 1.18310 1.19905 1.17984 0.91123 0.93053 0.90301 0.84883 0.83066 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.13 71.24 0.65 -2.41 15 2 C -0.18 -7.57 5.99 -19.00 -0.11 -7.68 15 3 C 0.02 0.68 5.75 -21.25 -0.12 0.56 15 4 C 0.29 11.11 13.98 88.33 1.24 12.35 15 5 N -0.46 -17.61 18.54 19.00 0.35 -17.26 15 6 C -0.25 -9.84 9.19 22.84 0.21 -9.63 15 7 C 0.06 2.78 6.58 42.71 0.28 3.06 15 8 C 0.33 11.97 5.72 71.24 0.41 12.38 15 9 F -0.20 -8.52 17.05 44.97 0.77 -7.76 15 10 F -0.20 -7.06 16.45 44.97 0.74 -6.33 15 11 N -0.48 -23.47 7.42 -177.45 -1.32 -24.78 15 12 C 0.23 10.82 6.55 40.20 0.26 11.08 15 13 C -0.44 -20.11 8.68 23.49 0.20 -19.90 15 14 H 0.11 4.54 6.02 -2.91 -0.02 4.52 15 15 C 0.02 1.09 5.50 85.30 0.47 1.56 15 16 N -0.74 -35.69 11.46 21.84 0.25 -35.44 15 17 Si 0.98 33.64 29.56 68.60 2.03 35.67 15 18 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 19 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 20 H -0.26 -8.38 7.11 99.48 0.71 -7.68 15 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.05 1.69 7.19 -2.38 -0.02 1.67 15 23 H 0.08 2.65 6.35 -2.39 -0.02 2.63 15 24 H 0.13 4.68 7.59 -2.91 -0.02 4.65 15 25 H 0.15 4.28 8.14 -2.39 -0.02 4.26 15 26 H 0.28 12.59 8.29 -92.71 -0.77 11.82 15 Total: -1.00 -54.35 250.58 7.54 -46.81 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.24 Total: 7.71 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 3.48 Total: 1.37 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -0.71 Total: -77.48 kcal Atomic # 9 Polarization: -15.59 SS G_CDS: 1.51 Total: -14.08 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -54.35 7.54 -46.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238445601.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.630 kcal (2) G-P(sol) polarization free energy of solvation -54.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds