Wall clock time and date at job start Mon Mar 30 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40851 * 120.36886 * 2 1 4 4 C 1.41033 * 119.65307 * 0.02562 * 3 2 1 5 5 H 1.07994 * 120.00198 * 6.77826 * 4 3 2 6 6 C 1.40251 * 119.99725 * 186.77617 * 4 3 2 7 7 N 1.30611 * 120.00335 * 177.71016 * 6 4 3 8 8 Si 1.86808 * 119.99941 * 357.43401 * 6 4 3 9 9 H 1.48493 * 109.46926 * 180.27560 * 8 6 4 10 10 H 1.48497 * 109.46992 * 300.27471 * 8 6 4 11 11 H 1.48498 * 109.46982 * 60.27242 * 8 6 4 12 12 N 1.33787 * 120.68328 * 179.74188 * 3 2 1 13 13 C 1.31140 * 121.54697 * 0.26338 * 12 3 2 14 14 C 1.40276 * 120.66721 * 359.97111 * 13 12 3 15 15 C 1.43204 * 120.37235 * 180.02562 * 14 13 12 16 16 N 4.78960 * 136.28742 * 179.97438 * 2 1 3 17 17 C 1.36720 * 120.36359 * 180.23798 * 2 1 3 18 18 C 1.50699 * 120.71400 * 359.97009 * 17 2 1 19 19 F 1.39904 * 109.46928 * 293.47817 * 18 17 2 20 20 F 1.39901 * 109.47483 * 53.48151 * 18 17 2 21 21 H 1.08999 * 109.47239 * 85.00532 * 1 2 3 22 22 H 1.09001 * 109.47494 * 205.00793 * 1 2 3 23 23 H 1.09008 * 109.46775 * 325.00303 * 1 2 3 24 24 H 0.97006 * 119.99337 * 354.75729 * 7 6 4 25 25 H 1.07995 * 119.66602 * 179.97438 * 13 12 3 26 26 H 1.09004 * 109.47295 * 173.48212 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2191 1.2152 0.0000 4 6 1.5144 2.4369 0.0005 5 1 0.4402 2.4406 0.1113 6 6 2.2088 3.6470 -0.1428 7 7 1.5524 4.7753 -0.1872 8 14 4.0730 3.6456 -0.2623 9 1 4.5611 5.0412 -0.4008 10 1 4.6474 3.0399 0.9658 11 1 4.4924 2.8546 -1.4471 12 7 3.5570 1.2226 0.0052 13 6 4.2492 0.1088 0.0053 14 6 3.6021 -1.1358 0.0005 15 6 4.3643 -2.3482 0.0012 16 7 4.9690 -3.3098 0.0015 17 6 2.1981 -1.1797 -0.0049 18 6 1.4693 -2.4987 -0.0097 19 9 0.7844 -2.6574 1.1998 20 9 0.5563 -2.5232 -1.0694 21 1 -0.3634 0.0895 -1.0237 22 1 -0.3634 -0.9313 0.4344 23 1 -0.3633 0.8419 0.5895 24 1 0.5824 4.7720 -0.1978 25 1 5.3284 0.1502 0.0091 26 1 2.1872 -3.3101 -0.1298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238445868.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:54 Heat of formation + Delta-G solvation = -80.538976 kcal Electronic energy + Delta-G solvation = -16443.935983 eV Core-core repulsion = 13349.780067 eV Total energy + Delta-G solvation = -3094.155916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.13960 -48.06036 -41.01154 -37.63873 -36.01636 -34.89074 -33.39232 -29.32753 -28.41538 -26.62273 -23.57330 -22.94581 -20.55651 -19.29376 -18.89471 -18.30786 -17.96803 -17.06717 -16.38530 -15.52654 -15.12479 -14.93571 -14.75136 -14.65020 -14.44793 -14.30379 -14.17013 -13.85130 -13.72220 -13.60187 -13.31374 -12.84627 -12.55987 -12.42230 -11.84972 -11.50924 -11.32544 -10.66615 -9.89667 -9.81021 -9.43371 -7.00308 -0.08604 0.46796 1.58576 1.66277 1.73429 2.10033 2.12644 2.44893 2.61194 2.66247 2.97903 3.28795 3.31067 3.51531 3.79537 3.97030 4.25471 4.31907 4.49795 4.75757 4.81143 5.08430 5.15260 5.25586 5.28649 5.45949 5.83388 6.06178 6.36740 6.61302 7.31421 7.77014 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.010023 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.040602 B = 2792.946811 C = 3629.172981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.181 4.181 3 C 0.236 3.764 4 C -0.440 4.440 5 H 0.095 0.905 6 C 0.018 3.982 7 N -0.789 5.789 8 Si 1.178 2.822 9 H -0.332 1.332 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.586 5.586 13 C 0.215 3.785 14 C -0.222 4.222 15 C 0.298 3.702 16 N -0.486 5.486 17 C -0.061 4.061 18 C 0.319 3.681 19 F -0.199 7.199 20 F -0.198 7.198 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.292 0.708 25 H 0.178 0.822 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 -6.055 -0.146 6.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.186 4.186 3 C 0.115 3.885 4 C -0.470 4.470 5 H 0.113 0.887 6 C -0.205 4.205 7 N -0.409 5.409 8 Si 1.011 2.989 9 H -0.265 1.265 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.304 5.304 13 C 0.048 3.952 14 C -0.232 4.232 15 C -0.014 4.014 16 N -0.165 5.165 17 C -0.068 4.068 18 C 0.266 3.734 19 F -0.181 7.181 20 F -0.179 7.179 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.194 0.806 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.882 -5.687 -0.220 5.994 hybrid contribution -2.530 -1.157 0.146 2.786 sum -0.648 -6.843 -0.074 6.874 Atomic orbital electron populations 1.20578 0.90003 1.02190 1.02035 1.20165 0.97420 0.91952 1.09056 1.18694 0.88158 0.93047 0.88575 1.21299 0.97215 0.91537 1.36985 0.88723 1.28682 1.12986 0.90370 0.88452 1.70607 1.12743 1.29398 1.28169 0.81464 0.67365 0.70504 0.79615 1.26529 1.20540 1.21130 1.66554 1.07788 1.29212 1.26844 1.22756 1.00270 0.85350 0.86822 1.15871 0.90097 0.88457 1.28821 1.25362 0.92574 0.92135 0.91307 1.81206 1.09301 1.11313 1.14673 1.19907 0.92767 0.93931 1.00244 1.20344 0.84668 0.96940 0.71495 1.92975 1.82121 1.96573 1.46401 1.92989 1.70047 1.97613 1.57256 0.91450 0.91739 0.91709 0.89603 0.80555 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 8.35 71.24 0.59 -2.60 15 2 C -0.18 -7.17 5.89 -19.58 -0.12 -7.28 15 3 C 0.24 10.36 6.42 40.17 0.26 10.62 15 4 C -0.44 -20.25 9.13 23.45 0.21 -20.04 15 5 H 0.09 4.28 6.25 -2.91 -0.02 4.26 15 6 C 0.02 0.82 5.52 85.36 0.47 1.29 15 7 N -0.79 -37.46 13.64 21.87 0.30 -37.16 15 8 Si 1.18 49.54 25.45 68.60 1.75 51.28 15 9 H -0.33 -14.03 7.11 99.48 0.71 -13.32 15 10 H -0.28 -11.47 6.89 99.48 0.69 -10.78 15 11 H -0.28 -11.74 6.99 99.48 0.69 -11.04 15 12 N -0.59 -24.76 4.51 -188.09 -0.85 -25.61 15 13 C 0.22 7.71 10.93 85.29 0.93 8.64 15 14 C -0.22 -7.75 5.78 -20.99 -0.12 -7.87 15 15 C 0.30 9.87 13.69 88.33 1.21 11.08 15 16 N -0.49 -16.90 18.54 19.00 0.35 -16.55 15 17 C -0.06 -2.21 5.41 -19.68 -0.11 -2.32 15 18 C 0.32 10.01 4.79 71.24 0.34 10.35 15 19 F -0.20 -6.43 15.99 44.97 0.72 -5.71 15 20 F -0.20 -6.30 15.87 44.97 0.71 -5.59 15 21 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.06 2.11 5.59 -2.39 -0.01 2.09 15 23 H 0.06 2.28 6.51 -2.38 -0.02 2.26 15 24 H 0.29 13.17 8.72 -92.70 -0.81 12.36 15 25 H 0.18 5.05 8.06 -2.91 -0.02 5.03 15 26 H 0.13 3.46 6.60 -2.38 -0.02 3.45 15 Total: -1.00 -48.74 240.75 7.83 -40.91 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: 1.17 Total: -3.44 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 3.68 Total: 1.87 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -0.20 Total: -79.32 kcal Atomic # 9 Polarization: -12.73 SS G_CDS: 1.43 Total: -11.30 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 1.75 Total: 51.28 kcal Total: -48.74 7.83 -40.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238445868.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.632 kcal (2) G-P(sol) polarization free energy of solvation -48.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds