Wall clock time and date at job start Mon Mar 30 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32222 * 119.23688 * 2 1 4 4 C 1.31294 * 122.37819 * 180.29481 * 3 2 1 5 5 C 1.40895 * 120.52348 * 359.69543 * 4 3 2 6 6 C 1.40755 * 120.77239 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00257 * 208.13379 * 6 5 4 8 8 C 1.40291 * 119.99838 * 28.14009 * 6 5 4 9 9 N 1.30634 * 120.00097 * 11.76403 * 8 6 5 10 10 Si 1.86800 * 119.99759 * 191.76309 * 8 6 5 11 11 H 1.48502 * 109.47074 * 90.00053 * 10 8 6 12 12 H 1.48498 * 109.47197 * 209.99973 * 10 8 6 13 13 H 1.48500 * 109.47380 * 329.99847 * 10 8 6 14 14 C 1.42374 * 118.45479 * 0.02562 * 5 4 3 15 15 C 1.43204 * 121.06047 * 179.97438 * 14 5 4 16 16 N 4.80993 * 134.93012 * 179.97438 * 2 1 3 17 17 C 1.38146 * 119.24530 * 179.70227 * 2 1 3 18 18 C 1.50696 * 120.37828 * 359.97438 * 17 2 1 19 19 F 1.39905 * 109.47052 * 65.91405 * 18 17 2 20 20 F 1.39902 * 109.46800 * 305.92054 * 18 17 2 21 21 H 1.08998 * 109.47383 * 265.30928 * 1 2 3 22 22 H 1.08992 * 109.47598 * 25.31657 * 1 2 3 23 23 H 1.09003 * 109.46601 * 145.31509 * 1 2 3 24 24 H 1.07999 * 119.74004 * 179.72258 * 4 3 2 25 25 H 0.96997 * 119.99497 * 179.97438 * 9 8 6 26 26 H 1.08996 * 109.47485 * 185.92134 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1528 1.1538 0.0000 4 6 3.4637 1.2257 -0.0057 5 6 4.2448 0.0531 -0.0057 6 6 5.6505 0.1241 -0.0123 7 1 6.2295 -0.6737 -0.4536 8 6 6.2995 1.2312 0.5543 9 7 5.6268 2.0787 1.2862 10 14 8.1259 1.4934 0.2624 11 1 8.3187 2.3183 -0.9573 12 1 8.7187 2.1919 1.4311 13 1 8.7920 0.1787 0.0813 14 6 3.5790 -1.2054 0.0000 15 6 4.3178 -2.4321 -0.0002 16 7 4.9039 -3.4053 0.0015 17 6 2.1819 -1.2054 0.0063 18 6 1.4198 -2.5054 0.0136 19 9 0.7191 -2.6420 -1.1896 20 9 0.5169 -2.5106 1.0822 21 1 -0.3634 -0.0840 1.0242 22 1 -0.3634 0.9289 -0.4394 23 1 -0.3632 -0.8451 -0.5848 24 1 3.9472 2.1914 -0.0100 25 1 6.0757 2.8440 1.6783 26 1 2.1179 -3.3352 0.1238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238467716.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:13 Heat of formation + Delta-G solvation = -62.118677 kcal Electronic energy + Delta-G solvation = -16335.519477 eV Core-core repulsion = 13242.162324 eV Total energy + Delta-G solvation = -3093.357152 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.60075 -46.52976 -39.05075 -35.76810 -34.70920 -32.07744 -31.71787 -28.51379 -25.94703 -24.51230 -22.95904 -21.05887 -18.17486 -17.32185 -17.16291 -16.77849 -16.03456 -15.44493 -14.85951 -13.89240 -13.83271 -13.41474 -13.23029 -12.92917 -12.65174 -12.56343 -12.26154 -11.98611 -11.91025 -11.69189 -11.57426 -11.41174 -11.24067 -10.97983 -10.80110 -10.21232 -9.78488 -8.73333 -8.45795 -7.95113 -7.35796 -4.97953 1.69074 2.18756 2.83303 2.86812 2.89330 3.49655 3.56960 3.98001 4.15246 4.22492 4.62589 4.96822 5.06988 5.11442 5.47814 5.55916 5.95659 6.27588 6.29876 6.34579 6.55552 6.63475 6.66624 6.91540 7.17645 7.48440 7.80924 8.09745 8.17803 8.39395 9.20777 9.58205 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.032285 B = 0.008474 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.054997 B = 3303.362804 C = 3935.965074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.030 3.970 3 N -0.465 5.465 4 C 0.105 3.895 5 C 0.092 3.908 6 C -0.419 4.419 7 H 0.090 0.910 8 C 0.073 3.927 9 N -0.767 5.767 10 Si 0.924 3.076 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.257 1.257 14 C -0.125 4.125 15 C 0.290 3.710 16 N -0.479 5.479 17 C -0.138 4.138 18 C 0.317 3.683 19 F -0.202 7.202 20 F -0.200 7.200 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.166 0.834 25 H 0.296 0.704 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 0.039 -1.125 2.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 N -0.174 5.174 4 C -0.066 4.066 5 C 0.084 3.916 6 C -0.448 4.448 7 H 0.108 0.892 8 C -0.150 4.150 9 N -0.390 5.390 10 Si 0.747 3.253 11 H -0.184 1.184 12 H -0.195 1.195 13 H -0.181 1.181 14 C -0.136 4.136 15 C -0.021 4.021 16 N -0.157 5.157 17 C -0.143 4.143 18 C 0.263 3.737 19 F -0.183 7.183 20 F -0.182 7.182 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.183 0.817 25 H 0.108 0.892 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.342 -0.564 -0.963 2.595 hybrid contribution 1.057 -0.227 0.049 1.082 sum -1.286 -0.790 -0.914 1.765 Atomic orbital electron populations 1.20542 0.90430 1.02166 1.01607 1.20078 0.95509 0.87077 1.07243 1.67087 1.11477 1.27993 1.10795 1.23383 0.87259 0.98821 0.97168 1.18401 0.94507 0.89727 0.88970 1.19737 0.91105 1.04079 1.29917 0.89169 1.26169 1.02598 0.94027 0.92207 1.69589 1.39653 1.10202 1.19540 0.85996 0.79664 0.80202 0.79439 1.18411 1.19518 1.18079 1.15792 0.89427 0.87784 1.20613 1.25533 0.92426 0.92093 0.92014 1.81086 1.09015 1.12232 1.13411 1.20464 0.92843 0.94223 1.06798 1.20260 0.84122 0.98001 0.71327 1.92949 1.81447 1.96927 1.46965 1.92965 1.70713 1.97749 1.56744 0.92008 0.91652 0.91971 0.81707 0.89210 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 8.79 36.00 0.32 -1.29 15 2 C 0.03 0.64 6.76 -82.46 -0.56 0.08 15 3 N -0.47 -10.56 10.21 -8.86 -0.09 -10.65 15 4 C 0.10 2.41 9.87 -16.78 -0.17 2.25 15 5 C 0.09 2.15 5.59 -106.35 -0.59 1.56 15 6 C -0.42 -9.66 8.51 -37.86 -0.32 -9.98 15 7 H 0.09 2.08 7.40 -52.49 -0.39 1.69 15 8 C 0.07 1.56 5.25 -17.29 -0.09 1.47 15 9 N -0.77 -16.64 10.88 55.57 0.60 -16.04 15 10 Si 0.92 16.18 29.58 -169.99 -5.03 11.15 15 11 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 12 H -0.27 -4.62 7.11 56.52 0.40 -4.22 15 13 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 14 C -0.13 -2.82 5.83 -105.83 -0.62 -3.44 15 15 C 0.29 6.43 12.63 -22.47 -0.28 6.14 15 16 N -0.48 -10.72 18.54 41.84 0.78 -9.94 15 17 C -0.14 -2.92 5.42 -104.11 -0.56 -3.48 15 18 C 0.32 5.85 4.81 36.00 0.17 6.03 15 19 F -0.20 -3.65 15.80 2.25 0.04 -3.62 15 20 F -0.20 -3.63 15.95 2.25 0.04 -3.60 15 21 H 0.06 1.05 8.05 -51.93 -0.42 0.63 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.06 1.05 5.93 -51.93 -0.31 0.74 15 24 H 0.17 3.76 6.23 -52.49 -0.33 3.43 15 25 H 0.30 5.73 8.29 -40.82 -0.34 5.39 15 26 H 0.10 1.79 6.59 -51.93 -0.34 1.45 15 LS Contribution 246.36 15.07 3.71 3.71 Total: -1.00 -24.14 246.36 -4.00 -28.14 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -1.34 Total: 1.50 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.71 Total: -0.67 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 1.29 Total: -36.63 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.15 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -24.14 -4.00 -28.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238467716.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.980 kcal (2) G-P(sol) polarization free energy of solvation -24.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds