Wall clock time and date at job start Mon Mar 30 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32222 * 119.23688 * 2 1 4 4 C 1.31294 * 122.37819 * 180.29481 * 3 2 1 5 5 C 1.40895 * 120.52348 * 359.69543 * 4 3 2 6 6 C 1.40755 * 120.77239 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00257 * 208.13379 * 6 5 4 8 8 C 1.40291 * 119.99838 * 28.14009 * 6 5 4 9 9 N 1.30634 * 120.00097 * 11.76403 * 8 6 5 10 10 Si 1.86800 * 119.99759 * 191.76309 * 8 6 5 11 11 H 1.48502 * 109.47074 * 90.00053 * 10 8 6 12 12 H 1.48498 * 109.47197 * 209.99973 * 10 8 6 13 13 H 1.48500 * 109.47380 * 329.99847 * 10 8 6 14 14 C 1.42374 * 118.45479 * 0.02562 * 5 4 3 15 15 C 1.43204 * 121.06047 * 179.97438 * 14 5 4 16 16 N 4.80993 * 134.93012 * 179.97438 * 2 1 3 17 17 C 1.38146 * 119.24530 * 179.70227 * 2 1 3 18 18 C 1.50696 * 120.37828 * 359.97438 * 17 2 1 19 19 F 1.39905 * 109.47052 * 65.91405 * 18 17 2 20 20 F 1.39902 * 109.46800 * 305.92054 * 18 17 2 21 21 H 1.08998 * 109.47383 * 265.30928 * 1 2 3 22 22 H 1.08992 * 109.47598 * 25.31657 * 1 2 3 23 23 H 1.09003 * 109.46601 * 145.31509 * 1 2 3 24 24 H 1.07999 * 119.74004 * 179.72258 * 4 3 2 25 25 H 0.96997 * 119.99497 * 179.97438 * 9 8 6 26 26 H 1.08996 * 109.47485 * 185.92134 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1528 1.1538 0.0000 4 6 3.4637 1.2257 -0.0057 5 6 4.2448 0.0531 -0.0057 6 6 5.6505 0.1241 -0.0123 7 1 6.2295 -0.6737 -0.4536 8 6 6.2995 1.2312 0.5543 9 7 5.6268 2.0787 1.2862 10 14 8.1259 1.4934 0.2624 11 1 8.3187 2.3183 -0.9573 12 1 8.7187 2.1919 1.4311 13 1 8.7920 0.1787 0.0813 14 6 3.5790 -1.2054 0.0000 15 6 4.3178 -2.4321 -0.0002 16 7 4.9039 -3.4053 0.0015 17 6 2.1819 -1.2054 0.0063 18 6 1.4198 -2.5054 0.0136 19 9 0.7191 -2.6420 -1.1896 20 9 0.5169 -2.5106 1.0822 21 1 -0.3634 -0.0840 1.0242 22 1 -0.3634 0.9289 -0.4394 23 1 -0.3632 -0.8451 -0.5848 24 1 3.9472 2.1914 -0.0100 25 1 6.0757 2.8440 1.6783 26 1 2.1179 -3.3352 0.1238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238467716.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:13 Heat of formation + Delta-G solvation = -74.014171 kcal Electronic energy + Delta-G solvation = -16336.035304 eV Core-core repulsion = 13242.162324 eV Total energy + Delta-G solvation = -3093.872980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.07631 -47.99665 -40.75477 -37.53164 -36.37576 -33.78202 -33.36243 -30.11146 -27.56118 -26.16204 -24.62736 -22.72598 -19.84109 -18.92162 -18.80546 -18.25353 -17.64110 -16.99179 -16.50394 -15.53630 -15.45114 -14.95374 -14.82541 -14.39176 -14.27821 -14.15497 -13.89398 -13.65167 -13.54264 -13.24122 -13.18227 -12.94190 -12.76238 -12.56682 -12.22947 -11.79740 -11.35331 -10.46415 -10.19029 -9.66551 -8.97738 -6.71928 -0.05036 0.51529 1.39174 1.47509 1.52749 1.72749 2.11796 2.21663 2.50639 2.69975 3.04022 3.27756 3.37661 3.59647 3.87201 4.04732 4.37839 4.64661 4.75434 4.88096 4.89402 4.99364 5.10889 5.25228 5.52144 5.77467 6.05885 6.36853 6.47081 6.62732 7.47086 7.99399 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.032285 B = 0.008474 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.054997 B = 3303.362804 C = 3935.965074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.017 3.983 3 N -0.474 5.474 4 C 0.092 3.908 5 C 0.072 3.928 6 C -0.441 4.441 7 H 0.083 0.917 8 C 0.044 3.956 9 N -0.787 5.787 10 Si 0.989 3.011 11 H -0.250 1.250 12 H -0.259 1.259 13 H -0.267 1.267 14 C -0.139 4.139 15 C 0.296 3.704 16 N -0.485 5.485 17 C -0.142 4.142 18 C 0.327 3.673 19 F -0.197 7.197 20 F -0.196 7.196 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.163 0.837 25 H 0.308 0.692 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 0.091 -1.093 2.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 N -0.183 5.183 4 C -0.078 4.078 5 C 0.064 3.936 6 C -0.470 4.470 7 H 0.101 0.899 8 C -0.178 4.178 9 N -0.410 5.410 10 Si 0.809 3.191 11 H -0.174 1.174 12 H -0.183 1.183 13 H -0.191 1.191 14 C -0.150 4.150 15 C -0.015 4.015 16 N -0.164 5.164 17 C -0.147 4.147 18 C 0.272 3.728 19 F -0.179 7.179 20 F -0.177 7.177 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.180 0.820 25 H 0.120 0.880 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.274 -0.506 -0.928 2.508 hybrid contribution 0.974 -0.230 0.058 1.002 sum -1.300 -0.736 -0.870 1.729 Atomic orbital electron populations 1.20576 0.87932 1.03177 1.02544 1.20676 0.97212 0.86779 1.06536 1.67104 1.11324 1.28897 1.10938 1.23334 0.87582 0.98694 0.98194 1.18623 0.95058 0.90270 0.89608 1.19885 0.91165 1.05028 1.30892 0.89905 1.26876 1.06310 0.93177 0.91408 1.69587 1.41425 1.10571 1.19383 0.85054 0.74513 0.79640 0.79927 1.17396 1.18339 1.19084 1.15941 0.90225 0.87620 1.21192 1.25491 0.92243 0.91937 0.91785 1.81078 1.09091 1.12458 1.13776 1.20738 0.92581 0.95581 1.05797 1.20127 0.84194 0.96933 0.71524 1.92958 1.81319 1.96812 1.46776 1.92974 1.70522 1.97663 1.56565 0.90974 0.90621 0.91013 0.82030 0.88017 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 8.79 71.23 0.63 -2.23 15 2 C 0.02 0.71 6.76 42.48 0.29 1.00 15 3 N -0.47 -21.39 10.21 -181.95 -1.86 -23.25 15 4 C 0.09 4.30 9.87 85.42 0.84 5.14 15 5 C 0.07 3.41 5.59 -20.98 -0.12 3.29 15 6 C -0.44 -20.45 8.51 23.38 0.20 -20.25 15 7 H 0.08 3.86 7.40 -2.91 -0.02 3.84 15 8 C 0.04 1.84 5.25 85.37 0.45 2.29 15 9 N -0.79 -33.82 10.88 21.88 0.24 -33.58 15 10 Si 0.99 32.28 29.58 68.60 2.03 34.31 15 11 H -0.25 -7.74 7.11 99.48 0.71 -7.04 15 12 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 13 H -0.27 -9.06 7.11 99.48 0.71 -8.35 15 14 C -0.14 -6.23 5.83 -20.65 -0.12 -6.35 15 15 C 0.30 12.99 12.63 88.33 1.12 14.11 15 16 N -0.49 -21.38 18.54 19.01 0.35 -21.03 15 17 C -0.14 -5.86 5.42 -19.53 -0.11 -5.97 15 18 C 0.33 11.49 4.81 71.23 0.34 11.83 15 19 F -0.20 -6.75 15.80 44.97 0.71 -6.04 15 20 F -0.20 -6.69 15.95 44.97 0.72 -5.97 15 21 H 0.07 2.28 8.05 -2.39 -0.02 2.26 15 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.07 2.26 5.93 -2.39 -0.01 2.25 15 24 H 0.16 7.48 6.23 -2.91 -0.02 7.46 15 25 H 0.31 11.63 8.29 -92.71 -0.77 10.86 15 26 H 0.11 3.79 6.59 -2.39 -0.02 3.77 15 Total: -1.00 -49.50 246.36 6.95 -42.54 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.24 Total: 10.16 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 3.52 Total: 2.86 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.27 Total: -77.86 kcal Atomic # 9 Polarization: -13.44 SS G_CDS: 1.43 Total: -12.01 kcal Atomic # 14 Polarization: 32.28 SS G_CDS: 2.03 Total: 34.31 kcal Total: -49.50 6.95 -42.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238467716.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.470 kcal (2) G-P(sol) polarization free energy of solvation -49.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds