Wall clock time and date at job start Mon Mar 30 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31886 * 119.44303 * 2 1 4 4 C 1.31521 * 122.16341 * 179.97438 * 3 2 1 5 5 C 1.40814 * 120.72940 * 359.97438 * 4 3 2 6 6 C 1.41454 * 120.59128 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99558 * 154.92454 * 6 5 4 8 8 C 1.39934 * 120.00083 * 334.92772 * 6 5 4 9 9 N 1.30826 * 119.99980 * 342.86483 * 8 6 5 10 10 Si 1.86799 * 119.99997 * 162.86496 * 8 6 5 11 11 H 1.48498 * 109.47086 * 60.00053 * 10 8 6 12 12 H 1.48501 * 109.47062 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47448 * 300.00061 * 10 8 6 14 14 C 1.40844 * 118.81815 * 359.97438 * 5 4 3 15 15 C 1.50700 * 120.97371 * 180.02562 * 14 5 4 16 16 F 1.39899 * 109.47026 * 300.00551 * 15 14 5 17 17 F 1.39894 * 109.46964 * 60.00277 * 15 14 5 18 18 C 1.39506 * 118.05411 * 0.02562 * 14 5 4 19 19 C 1.43201 * 120.43580 * 179.97438 * 18 14 5 20 20 N 3.49191 * 80.09421 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.46904 * 90.00558 * 1 2 3 22 22 H 1.09005 * 109.47285 * 209.99801 * 1 2 3 23 23 H 1.09001 * 109.47346 * 330.00373 * 1 2 3 24 24 H 1.07996 * 119.63702 * 180.02562 * 4 3 2 25 25 H 0.96998 * 120.00002 * 180.02562 * 9 8 6 26 26 H 1.08997 * 109.46754 * 180.02562 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1553 1.1485 0.0000 4 6 3.4690 1.2109 0.0005 5 6 4.2452 0.0360 0.0016 6 6 5.6580 0.1066 0.0027 7 1 6.2392 -0.7125 0.3999 8 6 6.3024 1.2376 -0.5108 9 7 5.6502 2.0677 -1.2835 10 14 8.0940 1.5620 -0.0931 11 1 8.9263 0.4279 -0.5686 12 1 8.5382 2.8139 -0.7569 13 1 8.2418 1.7018 1.3779 14 6 3.5898 -1.2106 0.0027 15 6 4.3726 -2.4984 0.0045 16 9 5.1789 -2.5555 -1.1373 17 9 5.1778 -2.5530 1.1472 18 6 2.1947 -1.2185 0.0021 19 6 1.4763 -2.4572 0.0026 20 7 0.9063 -3.4399 -0.0015 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 3.9579 2.1739 0.0009 25 1 6.0971 2.8515 -1.6398 26 1 3.6831 -3.3426 0.0047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238467786.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:04 Heat of formation + Delta-G solvation = -60.022854 kcal Electronic energy + Delta-G solvation = -16468.399110 eV Core-core repulsion = 13375.132840 eV Total energy + Delta-G solvation = -3093.266270 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.14827 -46.11500 -39.09357 -36.16629 -34.52862 -32.36563 -31.42469 -28.36163 -26.04735 -24.59683 -22.97226 -20.30249 -18.87102 -17.16799 -16.48320 -16.38522 -16.15134 -15.31658 -14.91458 -13.92717 -13.69412 -13.32607 -13.04718 -12.73217 -12.68234 -12.52461 -12.50689 -12.03172 -11.97405 -11.71009 -11.44799 -11.36677 -11.06440 -10.92629 -10.53132 -10.34177 -9.63472 -8.80719 -8.41201 -7.87434 -7.24836 -4.84484 1.56210 2.28257 2.90851 2.93257 2.97871 3.08277 3.64859 3.68088 4.27765 4.49048 4.53539 5.00082 5.08877 5.37657 5.44500 5.84095 5.89604 6.16934 6.21994 6.34361 6.53926 6.70430 6.75842 6.93181 7.16578 7.53312 7.89945 7.97911 8.19513 8.32757 9.21274 9.70989 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.010324 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.695088 B = 2711.471469 C = 3534.272527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.030 3.970 3 N -0.464 5.464 4 C 0.096 3.904 5 C 0.084 3.916 6 C -0.422 4.422 7 H 0.096 0.904 8 C 0.075 3.925 9 N -0.772 5.772 10 Si 0.921 3.079 11 H -0.260 1.260 12 H -0.274 1.274 13 H -0.258 1.258 14 C -0.231 4.231 15 C 0.336 3.664 16 F -0.198 7.198 17 F -0.204 7.204 18 C -0.022 4.022 19 C 0.274 3.726 20 N -0.451 5.451 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.163 0.837 25 H 0.294 0.706 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -0.372 1.453 1.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 N -0.171 5.171 4 C -0.072 4.072 5 C 0.078 3.922 6 C -0.450 4.450 7 H 0.114 0.886 8 C -0.147 4.147 9 N -0.395 5.395 10 Si 0.744 3.256 11 H -0.184 1.184 12 H -0.198 1.198 13 H -0.182 1.182 14 C -0.241 4.241 15 C 0.282 3.718 16 F -0.179 7.179 17 F -0.186 7.186 18 C -0.028 4.028 19 C -0.040 4.040 20 N -0.128 5.128 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.180 0.820 25 H 0.105 0.895 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.055 -0.970 1.287 1.927 hybrid contribution 1.659 -0.229 -0.012 1.675 sum 0.605 -1.199 1.275 1.852 Atomic orbital electron populations 1.20400 0.90497 1.01676 1.01463 1.20364 0.95176 0.86525 1.08363 1.67107 1.11322 1.27503 1.11192 1.23364 0.87230 0.99070 0.97574 1.18156 0.94751 0.90059 0.89184 1.19838 0.90916 1.02517 1.31751 0.88588 1.26096 1.02114 0.94426 0.92092 1.69709 1.39616 1.10561 1.19654 0.86107 0.80222 0.78883 0.80383 1.18379 1.19822 1.18165 1.20236 0.91002 0.94722 1.18123 1.19788 0.83846 0.96688 0.71438 1.92977 1.76227 1.97479 1.51262 1.92939 1.76487 1.97506 1.51637 1.16318 0.91329 0.87179 1.07989 1.26001 0.92575 0.92736 0.92662 1.81142 1.09664 1.11391 1.10597 0.92166 0.92836 0.91256 0.81970 0.89501 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.76 36.00 0.35 -1.05 15 2 C 0.03 0.62 6.83 -81.94 -0.56 0.06 15 3 N -0.46 -10.42 10.23 -8.48 -0.09 -10.50 15 4 C 0.10 2.25 9.88 -16.71 -0.17 2.09 15 5 C 0.08 2.00 5.56 -106.71 -0.59 1.41 15 6 C -0.42 -9.94 7.94 -37.72 -0.30 -10.24 15 7 H 0.10 2.26 6.21 -52.49 -0.33 1.94 15 8 C 0.07 1.64 5.16 -17.35 -0.09 1.55 15 9 N -0.77 -17.29 10.98 55.55 0.61 -16.68 15 10 Si 0.92 16.65 29.59 -169.99 -5.03 11.62 15 11 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 12 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 13 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 14 C -0.23 -5.16 5.48 -103.16 -0.57 -5.73 15 15 C 0.34 6.94 4.85 36.01 0.17 7.12 15 16 F -0.20 -4.32 16.62 2.25 0.04 -4.28 15 17 F -0.20 -4.27 15.83 2.25 0.04 -4.24 15 18 C -0.02 -0.47 5.74 -106.87 -0.61 -1.08 15 19 C 0.27 5.36 12.11 -22.47 -0.27 5.08 15 20 N -0.45 -8.83 18.54 41.84 0.78 -8.06 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.05 0.85 7.05 -51.93 -0.37 0.48 15 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.16 3.78 6.18 -52.49 -0.32 3.45 15 25 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 26 H 0.09 1.61 6.58 -51.93 -0.34 1.27 15 LS Contribution 247.02 15.07 3.72 3.72 Total: -1.00 -24.33 247.02 -3.91 -28.23 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -1.34 Total: 0.96 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.63 Total: -0.78 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 1.30 Total: -35.24 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -24.33 -3.91 -28.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238467786.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.789 kcal (2) G-P(sol) polarization free energy of solvation -24.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds