Wall clock time and date at job start Mon Mar 30 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37600 * 118.99653 * 2 1 4 4 C 1.41161 * 118.90860 * 180.29897 * 3 2 1 5 5 C 1.40925 * 121.35624 * 179.70795 * 4 3 2 6 6 H 1.08003 * 119.99557 * 155.44362 * 5 4 3 7 7 C 1.40322 * 120.00314 * 335.43515 * 5 4 3 8 8 N 1.30597 * 120.00111 * 334.79287 * 7 5 4 9 9 Si 1.86798 * 119.99814 * 154.79266 * 7 5 4 10 10 H 1.48503 * 109.47232 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47471 * 299.99957 * 9 7 5 12 12 H 1.48496 * 109.47448 * 60.00383 * 9 7 5 13 13 C 1.46843 * 117.27303 * 359.43999 * 4 3 2 14 14 C 1.43203 * 121.01095 * 180.29293 * 13 4 3 15 15 N 4.87480 * 133.36359 * 359.97438 * 3 1 2 16 16 C 1.39552 * 117.97412 * 0.27097 * 13 4 3 17 17 C 1.50700 * 119.66949 * 179.97438 * 16 13 4 18 18 F 1.39891 * 109.47181 * 209.99750 * 17 16 13 19 19 F 1.39898 * 109.47222 * 330.00167 * 17 16 13 20 20 N 1.31594 * 120.65784 * 0.02562 * 16 13 4 21 21 H 1.09001 * 109.46734 * 270.28306 * 1 2 3 22 22 H 1.09002 * 109.47250 * 30.28246 * 1 2 3 23 23 H 1.08994 * 109.46872 * 150.28608 * 1 2 3 24 24 H 1.07990 * 120.54530 * 0.02562 * 3 2 1 25 25 H 0.96996 * 119.99475 * 354.73126 * 8 7 5 26 26 H 1.09008 * 109.46730 * 89.99552 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.2035 0.0000 4 6 3.5857 1.2014 -0.0064 5 6 4.3208 2.4037 -0.0129 6 1 5.3301 2.4215 0.3712 7 6 3.7416 3.5775 -0.5184 8 7 2.7806 3.5044 -1.3998 9 14 4.3452 5.2448 0.0692 10 1 3.5762 6.3176 -0.6113 11 1 4.1507 5.3524 1.5375 12 1 5.7879 5.3900 -0.2510 13 6 4.2566 -0.1048 -0.0001 14 6 5.6854 -0.2003 0.0004 15 7 6.8189 -0.2760 0.0016 16 6 3.4594 -1.2502 0.0061 17 6 4.1079 -2.6105 0.0122 18 9 3.2771 -3.5262 -0.6422 19 9 5.3392 -2.5430 -0.6485 20 7 2.1469 -1.1543 0.0056 21 1 -0.3633 0.0051 1.0277 22 1 -0.3634 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5094 24 1 1.6267 2.1344 0.0004 25 1 2.5192 2.6434 -1.7618 26 1 4.2651 -2.9334 1.0414 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238468833.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:54 Heat of formation + Delta-G solvation = -79.340940 kcal Electronic energy + Delta-G solvation = -16289.348945 eV Core-core repulsion = 13195.244979 eV Total energy + Delta-G solvation = -3094.103966 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.05592 -48.06794 -40.67245 -37.33545 -36.74261 -34.01027 -32.63149 -29.36528 -27.90158 -27.47345 -23.32440 -23.04106 -20.29036 -19.23533 -18.55506 -18.32265 -17.96935 -17.05867 -15.93575 -15.51538 -15.26068 -15.03542 -14.78222 -14.56261 -14.47126 -14.24060 -14.06155 -13.78237 -13.40745 -13.24363 -13.02384 -12.88786 -12.71108 -12.09927 -11.97802 -11.88277 -11.26130 -10.36852 -10.27979 -9.79670 -9.47132 -7.01291 -0.12669 0.60022 1.49293 1.58852 1.79617 1.88910 2.16081 2.20068 2.45056 2.54604 3.06665 3.18621 3.30980 3.47226 3.91487 4.08861 4.36708 4.53412 4.63972 4.86234 4.89348 5.01676 5.20078 5.25446 5.40818 5.63647 5.82118 6.23440 6.37421 6.75966 7.27195 7.66888 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.009486 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.773100 B = 2951.051608 C = 3903.567877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.149 3.851 3 C -0.262 4.262 4 C 0.116 3.884 5 C -0.484 4.484 6 H 0.079 0.921 7 C 0.012 3.988 8 N -0.761 5.761 9 Si 1.115 2.885 10 H -0.260 1.260 11 H -0.254 1.254 12 H -0.265 1.265 13 C -0.227 4.227 14 C 0.301 3.699 15 N -0.498 5.498 16 C 0.136 3.864 17 C 0.323 3.677 18 F -0.193 7.193 19 F -0.206 7.206 20 N -0.560 5.560 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.126 0.874 25 H 0.296 0.704 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -1.361 3.463 5.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.021 3.979 3 C -0.284 4.284 4 C 0.107 3.893 5 C -0.511 4.511 6 H 0.097 0.903 7 C -0.211 4.211 8 N -0.381 5.381 9 Si 0.930 3.070 10 H -0.184 1.184 11 H -0.178 1.178 12 H -0.189 1.189 13 C -0.239 4.239 14 C -0.009 4.009 15 N -0.177 5.177 16 C -0.008 4.008 17 C 0.268 3.732 18 F -0.174 7.174 19 F -0.187 7.187 20 N -0.276 5.276 21 H 0.107 0.893 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.144 0.856 25 H 0.109 0.891 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.545 -0.652 3.229 4.839 hybrid contribution 0.550 -1.056 -0.219 1.210 sum -2.995 -1.708 3.010 4.577 Atomic orbital electron populations 1.20711 0.87056 1.03516 1.03666 1.21233 0.97744 0.87311 0.91631 1.21908 0.93237 0.98683 1.14565 1.18923 0.92572 0.90435 0.87411 1.21051 1.02388 0.94373 1.33323 0.90296 1.28686 0.92040 1.08331 0.92039 1.70496 1.19514 1.32477 1.15623 0.83008 0.77116 0.68849 0.77995 1.18361 1.17844 1.18934 1.17511 0.84466 0.94792 1.27101 1.25388 0.92430 0.91435 0.91677 1.80995 1.12459 1.10115 1.14166 1.21366 0.91019 0.92629 0.95757 1.20457 0.73529 0.84599 0.94568 1.92970 1.72417 1.67777 1.84225 1.92990 1.44877 1.96422 1.84405 1.66736 1.07523 1.29228 1.24074 0.89274 0.90108 0.90382 0.85646 0.89099 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 10.13 71.24 0.72 -1.99 15 2 C 0.15 5.91 6.76 42.39 0.29 6.19 15 3 C -0.26 -11.39 7.63 22.84 0.17 -11.21 15 4 C 0.12 5.51 5.50 -19.65 -0.11 5.40 15 5 C -0.48 -23.11 8.59 23.44 0.20 -22.91 15 6 H 0.08 3.86 7.53 -2.91 -0.02 3.84 15 7 C 0.01 0.54 5.01 85.38 0.43 0.97 15 8 N -0.76 -34.60 12.35 21.89 0.27 -34.33 15 9 Si 1.12 36.87 30.00 68.60 2.06 38.93 15 10 H -0.26 -8.26 7.11 99.48 0.71 -7.55 15 11 H -0.25 -7.85 7.11 99.48 0.71 -7.14 15 12 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 13 C -0.23 -10.54 5.94 -19.46 -0.12 -10.65 15 14 C 0.30 14.21 11.70 88.33 1.03 15.25 15 15 N -0.50 -23.85 18.42 19.01 0.35 -23.50 15 16 C 0.14 5.72 6.63 42.91 0.28 6.01 15 17 C 0.32 11.43 5.53 71.24 0.39 11.82 15 18 F -0.19 -6.92 17.06 44.97 0.77 -6.15 15 19 F -0.21 -8.13 14.58 44.97 0.66 -7.48 15 20 N -0.56 -23.24 9.76 -171.61 -1.67 -24.91 15 21 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.08 2.16 8.06 -2.39 -0.02 2.14 15 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.13 5.38 6.56 -2.92 -0.02 5.36 15 25 H 0.30 13.95 6.60 -92.71 -0.61 13.34 15 26 H 0.16 4.36 8.14 -2.38 -0.02 4.34 15 Total: -1.00 -54.78 250.09 7.12 -47.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.39 Total: 10.91 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.30 Total: -1.12 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.05 Total: -82.75 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 1.42 Total: -13.63 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.06 Total: 38.93 kcal Total: -54.78 7.12 -47.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468833.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.683 kcal (2) G-P(sol) polarization free energy of solvation -54.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds