Wall clock time and date at job start Mon Mar 30 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36722 * 120.27529 * 2 1 4 4 C 1.41236 * 118.40756 * 180.27142 * 3 2 1 5 5 C 1.40971 * 120.54589 * 180.02562 * 4 3 2 6 6 H 1.07994 * 120.00065 * 150.45806 * 5 4 3 7 7 C 1.40234 * 120.00038 * 330.46400 * 5 4 3 8 8 N 1.30650 * 120.00189 * 162.70912 * 7 5 4 9 9 Si 1.86800 * 119.99905 * 342.70933 * 7 5 4 10 10 H 1.48500 * 109.47232 * 90.51915 * 9 7 5 11 11 H 1.48492 * 109.47432 * 210.52071 * 9 7 5 12 12 H 1.48501 * 109.47124 * 330.52102 * 9 7 5 13 13 C 1.41130 * 118.90741 * 0.02562 * 4 3 2 14 14 C 1.50710 * 119.78918 * 180.02562 * 13 4 3 15 15 F 1.39899 * 109.46705 * 201.43063 * 14 13 4 16 16 F 1.39898 * 109.47002 * 321.43393 * 14 13 4 17 17 N 1.31091 * 120.42170 * 0.02562 * 13 4 3 18 18 C 1.33199 * 121.72816 * 0.02562 * 17 13 4 19 19 C 1.43202 * 119.45668 * 179.97438 * 18 17 13 20 20 N 3.47674 * 80.24974 * 180.11150 * 2 1 3 21 21 H 1.08995 * 109.47243 * 269.72549 * 1 2 3 22 22 H 1.09005 * 109.46960 * 29.72329 * 1 2 3 23 23 H 1.09002 * 109.47112 * 149.72041 * 1 2 3 24 24 H 1.08003 * 120.79064 * 0.27641 * 3 2 1 25 25 H 0.97002 * 120.00407 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.46766 * 81.43337 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1807 0.0000 4 6 3.6079 1.1347 -0.0059 5 6 4.3635 2.3248 -0.0056 6 1 5.3417 2.3432 0.4516 7 6 3.8449 3.4848 -0.5989 8 7 4.3639 4.6504 -0.3177 9 14 2.4121 3.3635 -1.7912 10 1 1.1346 3.4870 -1.0442 11 1 2.5075 4.4559 -2.7926 12 1 2.4550 2.0511 -2.4848 13 6 4.2494 -0.1223 -0.0121 14 6 5.7548 -0.1946 -0.0178 15 9 6.1598 -1.4419 -0.5050 16 9 6.2670 0.8156 -0.8389 17 7 3.5443 -1.2274 -0.0128 18 6 2.2125 -1.2086 -0.0084 19 6 1.4907 -2.4454 -0.0100 20 7 0.9182 -3.4265 -0.0067 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 0.8925 -0.5096 23 1 -0.3633 -0.8875 -0.5182 24 1 1.6738 2.1260 0.0045 25 1 4.0050 5.4528 -0.7278 26 1 6.1287 -0.0622 0.9975 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238469166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:11 Heat of formation + Delta-G solvation = -55.155516 kcal Electronic energy + Delta-G solvation = -16409.550141 eV Core-core repulsion = 13316.494934 eV Total energy + Delta-G solvation = -3093.055207 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.09860 -46.11596 -39.30643 -35.83479 -34.46254 -33.21059 -31.75877 -28.18021 -26.44916 -24.96436 -22.61366 -20.66274 -18.82213 -17.76990 -16.72181 -16.65476 -15.78677 -15.60642 -14.73477 -14.01675 -13.68221 -13.52206 -13.02769 -12.89819 -12.60001 -12.49334 -12.37612 -12.23137 -12.05312 -12.03857 -11.77398 -11.52313 -11.13360 -10.84353 -10.51300 -10.16492 -9.88193 -8.77188 -8.67110 -8.12254 -7.57713 -5.11466 1.61182 2.14809 2.73092 2.88094 2.95749 3.34509 3.44780 3.56801 4.27340 4.42550 4.71674 4.85909 5.00462 5.39219 5.54207 5.60291 5.74986 5.93180 6.01458 6.13241 6.22837 6.41685 6.63930 6.89060 7.02346 7.23375 7.65916 7.81994 8.05583 8.25311 8.81285 9.37813 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.012762 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.640979 B = 2193.502515 C = 3387.331310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 C -0.216 4.216 4 C 0.067 3.933 5 C -0.370 4.370 6 H 0.112 0.888 7 C 0.079 3.921 8 N -0.754 5.754 9 Si 0.915 3.085 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.239 1.239 13 C -0.055 4.055 14 C 0.347 3.653 15 F -0.204 7.204 16 F -0.190 7.190 17 N -0.381 5.381 18 C 0.002 3.998 19 C 0.307 3.693 20 N -0.474 5.474 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.125 0.875 25 H 0.299 0.701 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 1.817 0.093 2.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.026 4.026 3 C -0.240 4.240 4 C 0.061 3.939 5 C -0.396 4.396 6 H 0.130 0.870 7 C -0.148 4.148 8 N -0.374 5.374 9 Si 0.739 3.261 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.162 1.162 13 C -0.207 4.207 14 C 0.293 3.707 15 F -0.186 7.186 16 F -0.172 7.172 17 N -0.089 5.089 18 C -0.134 4.134 19 C -0.006 4.006 20 N -0.154 5.154 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.111 0.889 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.855 -0.214 0.061 1.869 hybrid contribution -0.614 1.402 -0.518 1.615 sum -2.469 1.188 -0.457 2.778 Atomic orbital electron populations 1.20817 0.91852 1.02377 1.02336 1.19903 0.95451 0.92642 0.94570 1.20929 0.93710 0.96771 1.12614 1.18218 0.92276 0.93136 0.90301 1.19971 1.03777 0.90844 1.24961 0.87043 1.26464 0.97750 0.94049 0.96498 1.69551 1.36006 0.99731 1.32095 0.86252 0.79594 0.80546 0.79712 1.18460 1.20656 1.16224 1.21054 0.93835 0.89003 1.16797 1.19646 0.88595 0.70996 0.91491 1.92938 1.91695 1.43616 1.90332 1.93008 1.87825 1.60448 1.75879 1.66397 1.06233 1.31729 1.04531 1.15307 0.87918 0.85716 1.24410 1.25182 0.92125 0.91708 0.91607 1.81089 1.10559 1.10185 1.13561 0.90908 0.91429 0.91910 0.85777 0.88933 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.60 36.00 0.35 -1.49 15 2 C -0.02 -0.42 5.89 -104.53 -0.62 -1.04 15 3 C -0.22 -4.45 6.97 -38.99 -0.27 -4.72 15 4 C 0.07 1.47 5.11 -106.63 -0.54 0.93 15 5 C -0.37 -8.20 7.84 -37.80 -0.30 -8.50 15 6 H 0.11 2.52 6.84 -52.49 -0.36 2.16 15 7 C 0.08 1.71 5.43 -17.30 -0.09 1.61 15 8 N -0.75 -16.41 13.92 55.56 0.77 -15.63 15 9 Si 0.91 17.37 24.54 -169.99 -4.17 13.20 15 10 H -0.26 -4.60 6.47 56.52 0.37 -4.23 15 11 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 12 H -0.24 -4.84 7.01 56.52 0.40 -4.45 15 13 C -0.06 -1.21 6.65 -81.81 -0.54 -1.75 15 14 C 0.35 6.73 5.22 36.01 0.19 6.92 15 15 F -0.20 -4.12 16.97 2.25 0.04 -4.08 15 16 F -0.19 -3.90 14.72 2.25 0.03 -3.87 15 17 N -0.38 -8.57 9.76 -6.64 -0.06 -8.64 15 18 C 0.00 0.05 6.60 -84.71 -0.56 -0.51 15 19 C 0.31 6.40 13.96 -22.47 -0.31 6.09 15 20 N -0.47 -10.03 18.54 41.83 0.78 -9.26 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.07 0.96 8.09 -51.93 -0.42 0.54 15 23 H 0.06 0.98 7.07 -51.93 -0.37 0.61 15 24 H 0.12 2.41 4.56 -52.48 -0.24 2.17 15 25 H 0.30 5.79 8.29 -40.82 -0.34 5.45 15 26 H 0.11 1.71 8.14 -51.93 -0.42 1.29 15 LS Contribution 243.45 15.07 3.67 3.67 Total: -1.00 -24.58 243.45 -3.06 -27.64 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -1.41 Total: -0.58 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.71 Total: -2.46 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 1.48 Total: -33.53 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -4.17 Total: 13.20 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -24.58 -3.06 -27.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238469166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.512 kcal (2) G-P(sol) polarization free energy of solvation -24.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds