Wall clock time and date at job start Mon Mar 30 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36722 * 120.27529 * 2 1 4 4 C 1.41236 * 118.40756 * 180.27142 * 3 2 1 5 5 C 1.40971 * 120.54589 * 180.02562 * 4 3 2 6 6 H 1.07994 * 120.00065 * 150.45806 * 5 4 3 7 7 C 1.40234 * 120.00038 * 330.46400 * 5 4 3 8 8 N 1.30650 * 120.00189 * 162.70912 * 7 5 4 9 9 Si 1.86800 * 119.99905 * 342.70933 * 7 5 4 10 10 H 1.48500 * 109.47232 * 90.51915 * 9 7 5 11 11 H 1.48492 * 109.47432 * 210.52071 * 9 7 5 12 12 H 1.48501 * 109.47124 * 330.52102 * 9 7 5 13 13 C 1.41130 * 118.90741 * 0.02562 * 4 3 2 14 14 C 1.50710 * 119.78918 * 180.02562 * 13 4 3 15 15 F 1.39899 * 109.46705 * 201.43063 * 14 13 4 16 16 F 1.39898 * 109.47002 * 321.43393 * 14 13 4 17 17 N 1.31091 * 120.42170 * 0.02562 * 13 4 3 18 18 C 1.33199 * 121.72816 * 0.02562 * 17 13 4 19 19 C 1.43202 * 119.45668 * 179.97438 * 18 17 13 20 20 N 3.47674 * 80.24974 * 180.11150 * 2 1 3 21 21 H 1.08995 * 109.47243 * 269.72549 * 1 2 3 22 22 H 1.09005 * 109.46960 * 29.72329 * 1 2 3 23 23 H 1.09002 * 109.47112 * 149.72041 * 1 2 3 24 24 H 1.08003 * 120.79064 * 0.27641 * 3 2 1 25 25 H 0.97002 * 120.00407 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.46766 * 81.43337 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1807 0.0000 4 6 3.6079 1.1347 -0.0059 5 6 4.3635 2.3248 -0.0056 6 1 5.3417 2.3432 0.4516 7 6 3.8449 3.4848 -0.5989 8 7 4.3639 4.6504 -0.3177 9 14 2.4121 3.3635 -1.7912 10 1 1.1346 3.4870 -1.0442 11 1 2.5075 4.4559 -2.7926 12 1 2.4550 2.0511 -2.4848 13 6 4.2494 -0.1223 -0.0121 14 6 5.7548 -0.1946 -0.0178 15 9 6.1598 -1.4419 -0.5050 16 9 6.2670 0.8156 -0.8389 17 7 3.5443 -1.2274 -0.0128 18 6 2.2125 -1.2086 -0.0084 19 6 1.4907 -2.4454 -0.0100 20 7 0.9182 -3.4265 -0.0067 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 0.8925 -0.5096 23 1 -0.3633 -0.8875 -0.5182 24 1 1.6738 2.1260 0.0045 25 1 4.0050 5.4528 -0.7278 26 1 6.1287 -0.0622 0.9975 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238469166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:11 Heat of formation + Delta-G solvation = -68.756930 kcal Electronic energy + Delta-G solvation = -16410.139943 eV Core-core repulsion = 13316.494934 eV Total energy + Delta-G solvation = -3093.645008 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.68059 -47.70549 -40.92835 -37.49522 -36.10029 -34.73441 -33.40672 -29.67164 -28.04859 -26.49130 -24.23305 -22.23192 -20.45595 -19.39950 -18.32755 -18.20599 -17.37316 -17.20915 -16.29531 -15.58694 -15.24721 -15.06569 -14.61814 -14.49061 -14.08808 -14.02471 -13.98875 -13.77302 -13.68200 -13.50387 -13.21432 -13.08519 -12.69298 -12.41110 -12.02106 -11.75094 -11.44605 -10.36491 -10.30331 -9.73598 -9.18828 -6.79055 -0.01178 0.52461 1.22925 1.36670 1.46186 1.68712 1.82780 2.04735 2.63011 2.83877 3.12511 3.26924 3.46487 3.85025 4.12671 4.17508 4.24045 4.50512 4.58539 4.75178 4.83894 4.92609 5.14728 5.30019 5.42498 5.64148 5.98242 6.18687 6.39388 6.59388 7.15452 7.81801 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.012762 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.640979 B = 2193.502515 C = 3387.331310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 C -0.225 4.225 4 C 0.059 3.941 5 C -0.387 4.387 6 H 0.097 0.903 7 C 0.056 3.944 8 N -0.779 5.779 9 Si 0.949 3.051 10 H -0.233 1.233 11 H -0.269 1.269 12 H -0.261 1.261 13 C -0.071 4.071 14 C 0.345 3.655 15 F -0.210 7.210 16 F -0.199 7.199 17 N -0.401 5.401 18 C -0.009 4.009 19 C 0.314 3.686 20 N -0.480 5.480 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.138 0.862 25 H 0.311 0.689 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 2.170 0.067 3.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.022 4.022 3 C -0.248 4.248 4 C 0.053 3.947 5 C -0.413 4.413 6 H 0.115 0.885 7 C -0.169 4.169 8 N -0.400 5.400 9 Si 0.771 3.229 10 H -0.157 1.157 11 H -0.195 1.195 12 H -0.185 1.185 13 C -0.222 4.222 14 C 0.291 3.709 15 F -0.191 7.191 16 F -0.180 7.180 17 N -0.110 5.110 18 C -0.145 4.145 19 C 0.001 3.999 20 N -0.160 5.160 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.155 0.845 25 H 0.122 0.878 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.275 0.150 0.048 3.278 hybrid contribution -0.148 1.232 -0.495 1.336 sum -3.422 1.382 -0.447 3.718 Atomic orbital electron populations 1.20908 0.88838 1.03511 1.03968 1.20252 0.97620 0.91525 0.92772 1.21119 0.93264 0.97719 1.12746 1.18385 0.93184 0.92992 0.90160 1.19957 1.03584 0.91643 1.26128 0.88490 1.26951 0.99217 0.93600 0.97113 1.69538 1.37026 1.00394 1.32992 0.85736 0.78898 0.79620 0.78618 1.15708 1.19481 1.18467 1.21392 0.94932 0.88948 1.16889 1.19959 0.87741 0.70459 0.92784 1.92920 1.91638 1.44011 1.90567 1.92986 1.87816 1.60850 1.76375 1.66405 1.07033 1.32229 1.05296 1.15602 0.87908 0.86507 1.24504 1.25111 0.91900 0.91536 0.91377 1.81094 1.10887 1.10199 1.13776 0.88872 0.89339 0.91748 0.84463 0.87765 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 9.60 71.24 0.68 -2.56 15 2 C -0.02 -0.65 5.89 -19.81 -0.12 -0.77 15 3 C -0.22 -8.82 6.97 22.65 0.16 -8.66 15 4 C 0.06 2.55 5.11 -21.16 -0.11 2.44 15 5 C -0.39 -17.09 7.84 23.43 0.18 -16.91 15 6 H 0.10 4.45 6.84 -2.91 -0.02 4.43 15 7 C 0.06 2.36 5.43 85.35 0.46 2.83 15 8 N -0.78 -33.32 13.92 21.87 0.30 -33.02 15 9 Si 0.95 33.75 24.54 68.60 1.68 35.43 15 10 H -0.23 -7.28 6.47 99.48 0.64 -6.64 15 11 H -0.27 -9.03 7.11 99.48 0.71 -8.32 15 12 H -0.26 -10.14 7.01 99.48 0.70 -9.45 15 13 C -0.07 -3.04 6.65 43.38 0.29 -2.75 15 14 C 0.34 13.21 5.22 71.24 0.37 13.58 15 15 F -0.21 -8.37 16.97 44.97 0.76 -7.60 15 16 F -0.20 -8.18 14.72 44.97 0.66 -7.51 15 17 N -0.40 -17.78 9.76 -174.93 -1.71 -19.49 15 18 C -0.01 -0.38 6.60 40.60 0.27 -0.11 15 19 C 0.31 12.61 13.96 88.33 1.23 13.84 15 20 N -0.48 -19.52 18.54 19.00 0.35 -19.17 15 21 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.09 2.14 8.09 -2.38 -0.02 2.12 15 23 H 0.06 1.81 7.07 -2.39 -0.02 1.79 15 24 H 0.14 4.95 4.56 -2.91 -0.01 4.94 15 25 H 0.31 11.66 8.29 -92.71 -0.77 10.89 15 26 H 0.14 4.40 8.14 -2.39 -0.02 4.38 15 Total: -1.00 -50.67 243.45 6.65 -44.02 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.17 Total: 6.41 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 3.43 Total: 0.93 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.05 Total: -71.68 kcal Atomic # 9 Polarization: -16.54 SS G_CDS: 1.43 Total: -15.12 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 1.68 Total: 35.43 kcal Total: -50.67 6.65 -44.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238469166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.741 kcal (2) G-P(sol) polarization free energy of solvation -50.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds