Wall clock time and date at job start Mon Mar 30 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38209 * 120.65789 * 2 1 4 4 C 1.40793 * 119.20307 * 180.27374 * 3 2 1 5 5 C 1.41443 * 119.75935 * 179.72081 * 4 3 2 6 6 H 1.08004 * 119.99949 * 0.02843 * 5 4 3 7 7 C 1.40028 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.30737 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47177 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47093 * 120.00632 * 9 7 5 12 12 H 1.48504 * 109.47037 * 240.00352 * 9 7 5 13 13 N 1.33377 * 120.48831 * 359.74848 * 4 3 2 14 14 C 1.32358 * 121.40742 * 359.97438 * 13 4 3 15 15 C 1.43197 * 119.61490 * 180.02562 * 14 13 4 16 16 N 4.80284 * 135.44741 * 180.02562 * 2 1 3 17 17 C 1.38779 * 120.65714 * 179.77232 * 2 1 3 18 18 C 1.50703 * 120.27542 * 0.02562 * 17 2 1 19 19 F 1.39904 * 109.46969 * 59.71857 * 18 17 2 20 20 F 1.39901 * 109.47086 * 299.72260 * 18 17 2 21 21 H 1.09004 * 109.46842 * 270.22468 * 1 2 3 22 22 H 1.08998 * 109.46983 * 30.22638 * 1 2 3 23 23 H 1.09003 * 109.46938 * 150.22724 * 1 2 3 24 24 H 1.08007 * 120.39883 * 0.02562 * 3 2 1 25 25 H 0.96999 * 120.00186 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47152 * 179.71928 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2118 1.1889 0.0000 4 6 3.6192 1.1532 -0.0059 5 6 4.3522 2.3628 -0.0119 6 1 3.8321 3.3094 -0.0116 7 6 5.7522 2.3333 -0.0183 8 7 6.3817 1.1875 -0.0192 9 14 6.7201 3.9309 -0.0256 10 1 5.7791 5.0798 -0.0226 11 1 7.5810 3.9935 1.1827 12 1 7.5697 3.9894 -1.2422 13 7 4.2665 -0.0130 -0.0063 14 6 3.6136 -1.1643 -0.0008 15 6 4.3474 -2.3940 -0.0010 16 7 4.9296 -3.3695 -0.0015 17 6 2.2146 -1.1938 0.0047 18 6 1.4825 -2.5110 0.0094 19 9 0.6750 -2.5997 -1.1297 20 9 0.6839 -2.5966 1.1549 21 1 -0.3633 0.0040 1.0277 22 1 -0.3633 0.8879 -0.5173 23 1 -0.3633 -0.8920 -0.5103 24 1 1.6891 2.1341 0.0004 25 1 7.3515 1.1669 -0.0240 26 1 2.2042 -3.3279 0.0077 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470527.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:25 Heat of formation + Delta-G solvation = -62.302137 kcal Electronic energy + Delta-G solvation = -16255.703427 eV Core-core repulsion = 13162.338319 eV Total energy + Delta-G solvation = -3093.365108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.91051 -47.84232 -40.63186 -37.68420 -35.96149 -34.27333 -32.85522 -29.58231 -27.88611 -26.35500 -24.52061 -22.44700 -19.53526 -19.17035 -18.44914 -18.10773 -17.85708 -16.84846 -16.32413 -15.45738 -15.24807 -14.88699 -14.58164 -14.28763 -14.25202 -14.09437 -14.00624 -13.67620 -13.41804 -13.31858 -13.01771 -12.78321 -12.72441 -12.64932 -11.90337 -11.58207 -11.30051 -10.06249 -9.92002 -9.85203 -8.49588 -6.71716 -0.00808 0.78167 1.44060 1.45090 1.46630 1.60493 1.97807 2.18851 2.72889 2.73251 2.91608 3.39079 3.63740 3.75664 4.17727 4.23582 4.42484 4.67751 4.71379 4.87824 5.01175 5.11557 5.16934 5.34534 5.60988 5.87737 6.06756 6.26509 6.51955 6.70237 7.74203 8.26182 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.008042 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.872089 B = 3481.087341 C = 4165.159714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.007 3.993 3 C -0.252 4.252 4 C 0.228 3.772 5 C -0.427 4.427 6 H 0.112 0.888 7 C 0.021 3.979 8 N -0.745 5.745 9 Si 0.992 3.008 10 H -0.244 1.244 11 H -0.269 1.269 12 H -0.269 1.269 13 N -0.486 5.486 14 C 0.230 3.770 15 C 0.291 3.709 16 N -0.435 5.435 17 C -0.330 4.330 18 C 0.338 3.662 19 F -0.205 7.205 20 F -0.205 7.205 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.136 0.864 25 H 0.285 0.715 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 1.814 0.027 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.002 3.998 3 C -0.275 4.275 4 C 0.105 3.895 5 C -0.456 4.456 6 H 0.130 0.870 7 C -0.203 4.203 8 N -0.366 5.366 9 Si 0.812 3.188 10 H -0.167 1.167 11 H -0.194 1.194 12 H -0.194 1.194 13 N -0.201 5.201 14 C 0.081 3.919 15 C -0.025 4.025 16 N -0.114 5.114 17 C -0.340 4.340 18 C 0.284 3.716 19 F -0.186 7.186 20 F -0.187 7.187 21 H 0.100 0.900 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.153 0.847 25 H 0.096 0.904 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.474 0.302 0.020 4.484 hybrid contribution -0.403 0.697 0.009 0.805 sum -4.877 0.999 0.029 4.979 Atomic orbital electron populations 1.20920 0.88953 1.03871 1.03272 1.19795 0.96854 0.91176 0.91968 1.21995 0.94142 0.97963 1.13429 1.18984 0.90182 0.90949 0.89407 1.20335 0.92024 0.93248 1.39981 0.87039 1.27148 0.99400 1.01433 0.92320 1.70177 1.10521 1.28817 1.27069 0.84982 0.78119 0.77073 0.78629 1.16662 1.19436 1.19424 1.68742 1.37380 0.96258 1.17732 1.16499 0.87834 0.88396 0.99169 1.25645 0.91881 0.92231 0.92743 1.81074 1.08170 1.12818 1.09289 1.20254 0.92385 0.95143 1.26260 1.19837 0.84045 0.96869 0.70847 1.92918 1.76361 1.97274 1.52033 1.92952 1.76861 1.97428 1.51416 0.89966 0.89607 0.91154 0.84656 0.90450 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.40 9.10 71.24 0.65 -2.75 15 2 C 0.01 0.27 5.87 -19.74 -0.12 0.16 15 3 C -0.25 -10.52 9.53 22.89 0.22 -10.30 15 4 C 0.23 11.14 6.55 40.32 0.26 11.41 15 5 C -0.43 -20.00 9.14 23.49 0.21 -19.79 15 6 H 0.11 4.66 7.85 -2.91 -0.02 4.63 15 7 C 0.02 0.94 5.50 85.29 0.47 1.41 15 8 N -0.75 -37.19 11.46 21.84 0.25 -36.94 15 9 Si 0.99 33.78 29.56 68.60 2.03 35.81 15 10 H -0.24 -7.70 7.11 99.48 0.71 -6.99 15 11 H -0.27 -9.06 7.11 99.48 0.71 -8.35 15 12 H -0.27 -9.05 7.11 99.48 0.71 -8.35 15 13 N -0.49 -24.97 7.77 -182.59 -1.42 -26.39 15 14 C 0.23 10.55 6.59 40.72 0.27 10.82 15 15 C 0.29 12.77 13.72 88.33 1.21 13.98 15 16 N -0.44 -18.77 18.54 19.00 0.35 -18.42 15 17 C -0.33 -13.44 5.44 -19.32 -0.11 -13.54 15 18 C 0.34 11.87 4.81 71.24 0.34 12.21 15 19 F -0.20 -6.99 15.42 44.97 0.69 -6.30 15 20 F -0.21 -7.03 16.56 44.97 0.74 -6.29 15 21 H 0.08 2.26 8.14 -2.38 -0.02 2.24 15 22 H 0.09 2.19 8.10 -2.39 -0.02 2.17 15 23 H 0.07 2.09 5.67 -2.39 -0.01 2.08 15 24 H 0.14 4.91 8.06 -2.91 -0.02 4.89 15 25 H 0.28 12.92 8.29 -92.71 -0.77 12.15 15 26 H 0.11 3.48 6.45 -2.39 -0.02 3.46 15 Total: -1.00 -54.29 249.43 7.30 -46.99 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.24 Total: 7.94 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 3.42 Total: 3.60 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -0.82 Total: -81.75 kcal Atomic # 9 Polarization: -14.03 SS G_CDS: 1.44 Total: -12.59 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Total: -54.29 7.30 -46.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470527.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.311 kcal (2) G-P(sol) polarization free energy of solvation -54.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds