Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38610 * 119.41809 * 2 1 4 4 C 1.40194 * 119.39232 * 179.97438 * 3 2 1 5 5 C 1.43206 * 120.84452 * 180.02562 * 4 3 2 6 6 N 4.81639 * 134.91123 * 0.02562 * 2 1 3 7 7 C 1.39504 * 118.30823 * 0.02562 * 4 3 2 8 8 C 1.50700 * 120.59647 * 180.02562 * 7 4 3 9 9 F 1.39900 * 109.47399 * 121.71769 * 8 7 4 10 10 F 1.39905 * 109.47036 * 241.71893 * 8 7 4 11 11 C 1.40513 * 118.81240 * 0.02562 * 7 4 3 12 12 C 1.41401 * 119.76547 * 180.27418 * 11 7 4 13 13 H 1.08005 * 119.99966 * 352.72407 * 12 11 7 14 14 C 1.40053 * 119.99746 * 172.72760 * 12 11 7 15 15 N 1.30726 * 120.00158 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99667 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47301 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47089 * 119.99944 * 16 14 12 19 19 H 1.48505 * 109.46951 * 239.99555 * 16 14 12 20 20 N 1.31405 * 119.41856 * 179.97438 * 2 1 3 21 21 H 1.08994 * 109.47421 * 270.02001 * 1 2 3 22 22 H 1.09002 * 109.47372 * 30.02588 * 1 2 3 23 23 H 1.09006 * 109.47031 * 150.02052 * 1 2 3 24 24 H 1.08005 * 120.30214 * 359.97438 * 3 2 1 25 25 H 1.09005 * 109.46983 * 1.71143 * 8 7 4 26 26 H 0.96999 * 119.99640 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2074 0.0000 4 6 3.5897 1.2067 0.0005 5 6 4.3245 2.4359 0.0011 6 7 4.9074 3.4110 0.0015 7 6 4.2507 -0.0218 0.0005 8 6 5.7565 -0.0826 0.0017 9 9 6.1936 -0.7948 1.1237 10 9 6.1981 -0.7254 -1.1599 11 6 3.4874 -1.2015 -0.0006 12 6 4.1365 -2.4576 0.0052 13 1 5.2093 -2.5117 -0.1080 14 6 3.3884 -3.6317 0.1577 15 7 2.0900 -3.5663 0.2952 16 14 4.2461 -5.2912 0.1661 17 1 5.7080 -5.0938 -0.0046 18 1 3.9862 -5.9762 1.4578 19 1 3.7258 -6.1230 -0.9487 20 7 2.1524 -1.1446 0.0005 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6432 2.1401 -0.0004 25 1 6.1610 0.9291 0.0331 26 1 1.5720 -4.3795 0.4011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238476959.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = -49.055559 kcal Electronic energy + Delta-G solvation = -16455.733598 eV Core-core repulsion = 13362.942905 eV Total energy + Delta-G solvation = -3092.790693 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.09795 -46.04967 -38.87087 -36.23494 -34.07232 -32.54384 -30.97259 -28.04897 -26.73400 -23.82592 -23.17203 -20.64736 -18.54420 -16.91614 -16.46735 -16.32407 -15.91500 -15.20004 -14.72635 -13.68003 -13.63482 -13.22134 -12.97426 -12.90721 -12.75068 -12.46310 -12.45817 -12.06398 -11.70013 -11.61125 -11.41438 -11.15409 -11.07295 -10.87377 -10.38475 -9.94050 -9.58052 -8.58598 -8.01014 -7.93441 -6.74871 -4.87872 1.67022 2.33787 2.99434 2.99864 3.02028 3.06865 3.73297 3.79310 4.41249 4.44488 4.60059 5.09621 5.34851 5.41684 5.69544 5.94011 5.98895 6.15590 6.32089 6.43141 6.53728 6.76210 6.87299 7.01507 7.07478 7.48121 7.85397 7.98454 8.24506 8.53421 9.68487 9.97953 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.011608 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.839539 B = 2411.615886 C = 3511.246415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.172 3.828 3 C -0.275 4.275 4 C 0.068 3.932 5 C 0.270 3.730 6 N -0.445 5.445 7 C -0.302 4.302 8 C 0.338 3.662 9 F -0.202 7.202 10 F -0.205 7.205 11 C 0.276 3.724 12 C -0.396 4.396 13 H 0.097 0.903 14 C 0.066 3.934 15 N -0.700 5.700 16 Si 0.913 3.087 17 H -0.255 1.255 18 H -0.270 1.270 19 H -0.269 1.269 20 N -0.460 5.460 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 0.638 -0.102 1.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.021 3.979 3 C -0.300 4.300 4 C 0.058 3.942 5 C -0.044 4.044 6 N -0.121 5.121 7 C -0.311 4.311 8 C 0.284 3.716 9 F -0.183 7.183 10 F -0.186 7.186 11 C 0.153 3.847 12 C -0.425 4.425 13 H 0.115 0.885 14 C -0.162 4.162 15 N -0.319 5.319 16 Si 0.736 3.264 17 H -0.178 1.178 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.173 5.173 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.509 1.138 -0.069 1.248 hybrid contribution 0.619 -0.289 0.043 0.684 sum 0.110 0.849 -0.025 0.857 Atomic orbital electron populations 1.20566 0.90653 1.02010 1.01872 1.21186 0.96145 0.88652 0.91947 1.21084 0.91106 0.98734 1.19081 1.15665 0.92403 0.84880 1.01252 1.26171 0.92522 0.92948 0.92784 1.81140 1.09815 1.11289 1.09868 1.20798 0.93283 0.94048 1.23005 1.19743 0.90855 0.89691 0.71358 1.92959 1.90813 1.81576 1.52945 1.92953 1.90755 1.84655 1.50225 1.18115 0.87345 0.90851 0.88359 1.20029 0.95830 0.89159 1.37447 0.88468 1.26163 0.94846 1.01805 0.93367 1.70084 1.06230 1.30312 1.25259 0.86149 0.81127 0.80255 0.78872 1.17848 1.19448 1.19432 1.68583 1.08320 1.24757 1.15627 0.91519 0.92225 0.90909 0.87038 0.89832 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 10.16 36.00 0.37 -1.19 15 2 C 0.17 3.62 6.78 -82.64 -0.56 3.06 15 3 C -0.27 -5.44 9.50 -38.71 -0.37 -5.81 15 4 C 0.07 1.40 5.75 -106.76 -0.61 0.79 15 5 C 0.27 5.23 13.71 -22.47 -0.31 4.92 15 6 N -0.44 -8.69 18.54 41.84 0.78 -7.91 15 7 C -0.30 -6.87 5.47 -103.29 -0.57 -7.43 15 8 C 0.34 7.07 4.80 36.01 0.17 7.25 15 9 F -0.20 -4.38 16.02 2.25 0.04 -4.34 15 10 F -0.20 -4.41 16.08 2.25 0.04 -4.37 15 11 C 0.28 6.91 6.53 -85.03 -0.56 6.36 15 12 C -0.40 -9.91 8.16 -37.70 -0.31 -10.22 15 13 H 0.10 2.40 5.56 -52.48 -0.29 2.11 15 14 C 0.07 1.56 5.49 -17.34 -0.10 1.46 15 15 N -0.70 -16.84 11.49 55.55 0.64 -16.21 15 16 Si 0.91 17.58 29.56 -169.99 -5.02 12.55 15 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 18 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 20 N -0.46 -11.33 7.78 -7.44 -0.06 -11.39 15 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 0.82 8.07 -51.93 -0.42 0.40 15 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.11 1.90 8.06 -52.48 -0.42 1.48 15 25 H 0.08 1.56 6.57 -51.93 -0.34 1.22 15 26 H 0.28 6.01 8.29 -40.82 -0.34 5.68 15 LS Contribution 249.98 15.07 3.77 3.77 Total: -1.00 -26.18 249.98 -4.12 -30.30 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.59 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.83 Total: -0.81 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 1.36 Total: -35.51 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.55 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.18 -4.12 -30.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476959.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.753 kcal (2) G-P(sol) polarization free energy of solvation -26.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds