Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38610 * 119.41809 * 2 1 4 4 C 1.40194 * 119.39232 * 179.97438 * 3 2 1 5 5 C 1.43206 * 120.84452 * 180.02562 * 4 3 2 6 6 N 4.81639 * 134.91123 * 0.02562 * 2 1 3 7 7 C 1.39504 * 118.30823 * 0.02562 * 4 3 2 8 8 C 1.50700 * 120.59647 * 180.02562 * 7 4 3 9 9 F 1.39900 * 109.47399 * 121.71769 * 8 7 4 10 10 F 1.39905 * 109.47036 * 241.71893 * 8 7 4 11 11 C 1.40513 * 118.81240 * 0.02562 * 7 4 3 12 12 C 1.41401 * 119.76547 * 180.27418 * 11 7 4 13 13 H 1.08005 * 119.99966 * 352.72407 * 12 11 7 14 14 C 1.40053 * 119.99746 * 172.72760 * 12 11 7 15 15 N 1.30726 * 120.00158 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99667 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47301 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47089 * 119.99944 * 16 14 12 19 19 H 1.48505 * 109.46951 * 239.99555 * 16 14 12 20 20 N 1.31405 * 119.41856 * 179.97438 * 2 1 3 21 21 H 1.08994 * 109.47421 * 270.02001 * 1 2 3 22 22 H 1.09002 * 109.47372 * 30.02588 * 1 2 3 23 23 H 1.09006 * 109.47031 * 150.02052 * 1 2 3 24 24 H 1.08005 * 120.30214 * 359.97438 * 3 2 1 25 25 H 1.09005 * 109.46983 * 1.71143 * 8 7 4 26 26 H 0.96999 * 119.99640 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2074 0.0000 4 6 3.5897 1.2067 0.0005 5 6 4.3245 2.4359 0.0011 6 7 4.9074 3.4110 0.0015 7 6 4.2507 -0.0218 0.0005 8 6 5.7565 -0.0826 0.0017 9 9 6.1936 -0.7948 1.1237 10 9 6.1981 -0.7254 -1.1599 11 6 3.4874 -1.2015 -0.0006 12 6 4.1365 -2.4576 0.0052 13 1 5.2093 -2.5117 -0.1080 14 6 3.3884 -3.6317 0.1577 15 7 2.0900 -3.5663 0.2952 16 14 4.2461 -5.2912 0.1661 17 1 5.7080 -5.0938 -0.0046 18 1 3.9862 -5.9762 1.4578 19 1 3.7258 -6.1230 -0.9487 20 7 2.1524 -1.1446 0.0005 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6432 2.1401 -0.0004 25 1 6.1610 0.9291 0.0331 26 1 1.5720 -4.3795 0.4011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238476959.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = -62.802442 kcal Electronic energy + Delta-G solvation = -16456.329708 eV Core-core repulsion = 13362.942905 eV Total energy + Delta-G solvation = -3093.386802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.78675 -47.74889 -40.55525 -37.83049 -35.77546 -34.17030 -32.67511 -29.57652 -28.47701 -25.40935 -24.87679 -22.32438 -20.23628 -18.58155 -18.14756 -18.02144 -17.58946 -16.85365 -16.41748 -15.28247 -15.21130 -14.82080 -14.65901 -14.41631 -14.34564 -14.16644 -14.06535 -13.65125 -13.26105 -13.18524 -12.91269 -12.69198 -12.65291 -12.54079 -11.96989 -11.60500 -11.24131 -10.28859 -9.72496 -9.62511 -8.45612 -6.67973 0.01676 0.66004 1.41650 1.45106 1.48003 1.56379 2.12685 2.20995 2.74291 2.78300 2.97517 3.47502 3.61022 3.78896 4.12814 4.31301 4.46000 4.64473 4.88933 4.98620 5.03207 5.16175 5.29950 5.39291 5.41731 5.86846 6.17152 6.28012 6.49907 6.76792 7.97869 8.29945 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.011608 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.839539 B = 2411.615886 C = 3511.246415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.156 3.844 3 C -0.259 4.259 4 C 0.068 3.932 5 C 0.281 3.719 6 N -0.441 5.441 7 C -0.325 4.325 8 C 0.338 3.662 9 F -0.209 7.209 10 F -0.211 7.211 11 C 0.254 3.746 12 C -0.434 4.434 13 H 0.089 0.911 14 C 0.030 3.970 15 N -0.731 5.731 16 Si 0.979 3.021 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.260 1.260 20 N -0.494 5.494 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.147 0.853 25 H 0.110 0.890 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 1.483 -0.077 2.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.007 3.993 3 C -0.284 4.284 4 C 0.058 3.942 5 C -0.034 4.034 6 N -0.117 5.117 7 C -0.334 4.334 8 C 0.284 3.716 9 F -0.190 7.190 10 F -0.192 7.192 11 C 0.131 3.869 12 C -0.463 4.463 13 H 0.107 0.893 14 C -0.195 4.195 15 N -0.351 5.351 16 Si 0.799 3.201 17 H -0.185 1.185 18 H -0.185 1.185 19 H -0.185 1.185 20 N -0.207 5.207 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.165 0.835 25 H 0.127 0.873 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.086 2.008 -0.044 2.284 hybrid contribution 0.722 -0.375 0.031 0.814 sum -0.364 1.634 -0.013 1.674 Atomic orbital electron populations 1.20640 0.87512 1.03239 1.03118 1.21969 0.98323 0.88288 0.90751 1.21519 0.90901 0.99804 1.16143 1.15732 0.92995 0.84716 1.00798 1.25780 0.92386 0.92489 0.92733 1.81169 1.09606 1.11224 1.09731 1.20958 0.94156 0.94285 1.23965 1.19919 0.90316 0.90479 0.70860 1.92937 1.90810 1.81938 1.53343 1.92932 1.90743 1.84955 1.50604 1.18444 0.88130 0.91768 0.88572 1.20169 0.95711 0.90394 1.40019 0.89336 1.26882 0.95407 1.04578 0.92627 1.70117 1.07254 1.31575 1.26199 0.85191 0.79462 0.76145 0.79327 1.18528 1.18541 1.18460 1.68568 1.08436 1.26785 1.16881 0.90115 0.88782 0.91882 0.83483 0.87272 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 10.16 71.23 0.72 -1.97 15 2 C 0.16 6.37 6.78 42.71 0.29 6.66 15 3 C -0.26 -9.59 9.50 22.83 0.22 -9.38 15 4 C 0.07 2.69 5.75 -21.25 -0.12 2.57 15 5 C 0.28 10.21 13.71 88.33 1.21 11.42 15 6 N -0.44 -16.09 18.54 19.01 0.35 -15.74 15 7 C -0.33 -14.71 5.47 -19.00 -0.10 -14.81 15 8 C 0.34 14.10 4.80 71.24 0.34 14.44 15 9 F -0.21 -9.14 16.02 44.97 0.72 -8.42 15 10 F -0.21 -9.16 16.08 44.97 0.72 -8.44 15 11 C 0.25 12.91 6.53 40.20 0.26 13.18 15 12 C -0.43 -22.30 8.16 23.49 0.19 -22.11 15 13 H 0.09 4.52 5.56 -2.91 -0.02 4.51 15 14 C 0.03 1.42 5.49 85.30 0.47 1.89 15 15 N -0.73 -35.76 11.49 21.84 0.25 -35.51 15 16 Si 0.98 36.46 29.56 68.60 2.03 38.49 15 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 19 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 20 N -0.49 -24.40 7.78 -177.45 -1.38 -25.78 15 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.09 2.22 8.07 -2.39 -0.02 2.20 15 23 H 0.06 2.06 8.14 -2.38 -0.02 2.04 15 24 H 0.15 4.36 8.06 -2.91 -0.02 4.33 15 25 H 0.11 3.94 6.57 -2.38 -0.02 3.93 15 26 H 0.29 12.50 8.29 -92.71 -0.77 11.73 15 Total: -1.00 -56.13 249.98 7.41 -48.72 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.24 Total: 4.80 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 3.48 Total: 1.88 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -0.78 Total: -77.03 kcal Atomic # 9 Polarization: -18.30 SS G_CDS: 1.44 Total: -16.85 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -56.13 7.41 -48.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476959.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.083 kcal (2) G-P(sol) polarization free energy of solvation -56.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds