Wall clock time and date at job start Mon Mar 30 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36753 * 120.36558 * 2 1 4 4 C 1.40425 * 118.57267 * 180.02562 * 3 2 1 5 5 C 1.43202 * 120.36714 * 180.02562 * 4 3 2 6 6 N 4.78955 * 136.28490 * 0.02562 * 2 1 3 7 7 C 1.40321 * 119.26227 * 359.97438 * 4 3 2 8 8 C 1.50700 * 119.66695 * 179.97438 * 7 4 3 9 9 F 1.39899 * 109.46972 * 210.00366 * 8 7 4 10 10 F 1.39904 * 109.47156 * 330.00662 * 8 7 4 11 11 N 1.31116 * 120.66647 * 359.72634 * 7 4 3 12 12 C 1.33824 * 121.54020 * 0.55974 * 11 7 4 13 13 C 1.41028 * 119.66000 * 179.70817 * 12 11 7 14 14 H 1.07992 * 120.00578 * 179.72608 * 13 12 11 15 15 C 1.40247 * 119.99701 * 359.73442 * 13 12 11 16 16 N 1.30624 * 120.00077 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00077 * 180.27267 * 15 13 12 18 18 H 1.48504 * 109.47032 * 179.72394 * 17 15 13 19 19 H 1.48498 * 109.47165 * 299.72340 * 17 15 13 20 20 H 1.48495 * 109.46978 * 59.72473 * 17 15 13 21 21 H 1.09001 * 109.47073 * 269.97658 * 1 2 3 22 22 H 1.09004 * 109.47111 * 29.97698 * 1 2 3 23 23 H 1.09005 * 109.47045 * 149.97618 * 1 2 3 24 24 H 1.08002 * 120.71194 * 0.04613 * 3 2 1 25 25 H 1.09005 * 109.46575 * 90.00301 * 8 7 4 26 26 H 0.97005 * 119.99999 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1799 0.0000 4 6 3.6019 1.1360 -0.0006 5 6 4.3642 2.3483 0.0000 6 7 4.9689 3.3099 0.0015 7 6 4.2492 -0.1090 -0.0005 8 6 5.7551 -0.1668 -0.0017 9 9 6.1767 -1.3264 -0.6611 10 9 6.2644 0.9566 -0.6620 11 7 3.5570 -1.2226 0.0054 12 6 2.2188 -1.2151 0.0004 13 6 1.5141 -2.4366 0.0009 14 1 0.4341 -2.4371 0.0013 15 6 2.2157 -3.6509 0.0008 16 7 3.5220 -3.6505 -0.0001 17 14 1.2823 -5.2691 -0.0063 18 1 2.2478 -6.3974 -0.0119 19 1 0.4291 -5.3537 1.2062 20 1 0.4282 -5.3424 -1.2188 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6760 2.1252 0.0007 25 1 6.1189 -0.1803 1.0257 26 1 4.0073 -4.4904 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238477411.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:59 Heat of formation + Delta-G solvation = -62.231689 kcal Electronic energy + Delta-G solvation = -16373.410119 eV Core-core repulsion = 13280.048066 eV Total energy + Delta-G solvation = -3093.362053 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91315 -47.91441 -40.54767 -37.31401 -35.70954 -34.46454 -32.56686 -29.37388 -28.65447 -25.75002 -24.10696 -22.37386 -19.69561 -19.05254 -18.49589 -18.37310 -17.69564 -16.61728 -16.39658 -15.24231 -15.05916 -14.77817 -14.48663 -14.31771 -14.18431 -14.06458 -13.79989 -13.44880 -13.18310 -13.12408 -12.91986 -12.83163 -12.74137 -12.34173 -12.06593 -11.58234 -11.23501 -10.17891 -9.78609 -9.59029 -8.48643 -6.66941 0.18577 0.93081 1.46838 1.51737 1.59404 1.97685 2.19489 2.27234 2.71854 2.85727 3.23229 3.43313 3.60137 3.71981 4.09730 4.38974 4.58927 4.69276 4.87575 4.90931 5.09847 5.18611 5.38721 5.48262 5.70255 5.90039 6.08475 6.50806 6.69708 6.85744 7.82002 8.23193 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.009579 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.044784 B = 2922.455299 C = 3900.417329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.232 4.232 3 C -0.013 4.013 4 C -0.241 4.241 5 C 0.299 3.701 6 N -0.506 5.506 7 C 0.121 3.879 8 C 0.320 3.680 9 F -0.196 7.196 10 F -0.206 7.206 11 N -0.485 5.485 12 C 0.220 3.780 13 C -0.398 4.398 14 H 0.119 0.881 15 C 0.017 3.983 16 N -0.719 5.719 17 Si 0.990 3.010 18 H -0.274 1.274 19 H -0.252 1.252 20 H -0.255 1.255 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.138 0.862 25 H 0.147 0.853 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -2.215 1.510 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.237 4.237 3 C -0.037 4.037 4 C -0.253 4.253 5 C -0.012 4.012 6 N -0.186 5.186 7 C -0.034 4.034 8 C 0.266 3.734 9 F -0.177 7.177 10 F -0.188 7.188 11 N -0.197 5.197 12 C 0.099 3.901 13 C -0.426 4.426 14 H 0.137 0.863 15 C -0.210 4.210 16 N -0.338 5.338 17 Si 0.809 3.191 18 H -0.198 1.198 19 H -0.176 1.176 20 H -0.179 1.179 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.156 0.844 25 H 0.164 0.836 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.942 -1.733 1.481 3.722 hybrid contribution -0.399 -0.141 -0.198 0.467 sum -3.341 -1.875 1.283 4.040 Atomic orbital electron populations 1.20449 0.89184 1.02337 1.01797 1.20604 0.98085 0.92581 1.12428 1.20679 0.90622 0.98326 0.94083 1.16088 0.93140 0.86220 1.29854 1.25665 0.91955 0.92312 0.91244 1.81045 1.09999 1.12492 1.15102 1.21817 0.95094 0.89754 0.96690 1.20384 0.88943 0.70368 0.93697 1.92979 1.90981 1.49880 1.83904 1.92961 1.88156 1.53214 1.84432 1.68429 1.08389 1.24950 1.17940 1.18980 0.87513 0.93640 0.89985 1.20507 0.96330 0.89431 1.36355 0.86284 1.27240 0.95725 1.05147 0.92848 1.70131 1.09197 1.30595 1.23887 0.85110 0.78633 0.74757 0.80593 1.19827 1.17577 1.17895 0.91635 0.91360 0.91582 0.84434 0.83558 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.49 9.49 71.24 0.68 -1.81 15 2 C -0.23 -9.32 5.91 -19.58 -0.12 -9.44 15 3 C -0.01 -0.51 9.50 22.45 0.21 -0.29 15 4 C -0.24 -10.26 5.76 -20.99 -0.12 -10.38 15 5 C 0.30 12.62 12.58 88.33 1.11 13.73 15 6 N -0.51 -22.06 18.39 19.00 0.35 -21.71 15 7 C 0.12 5.49 6.62 43.17 0.29 5.78 15 8 C 0.32 12.96 5.53 71.24 0.39 13.35 15 9 F -0.20 -8.64 17.06 44.97 0.77 -7.88 15 10 F -0.21 -8.58 14.52 44.97 0.65 -7.93 15 11 N -0.49 -23.96 7.44 -176.24 -1.31 -25.27 15 12 C 0.22 10.31 6.55 40.16 0.26 10.58 15 13 C -0.40 -17.52 8.67 23.44 0.20 -17.32 15 14 H 0.12 4.58 5.99 -2.91 -0.02 4.56 15 15 C 0.02 0.73 5.50 85.36 0.47 1.20 15 16 N -0.72 -33.76 11.44 21.87 0.25 -33.51 15 17 Si 0.99 31.55 29.56 68.60 2.03 33.58 15 18 H -0.27 -8.65 7.11 99.48 0.71 -7.94 15 19 H -0.25 -7.64 7.11 99.48 0.71 -6.93 15 20 H -0.25 -7.85 7.11 99.48 0.71 -7.15 15 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.07 1.79 8.09 -2.38 -0.02 1.77 15 23 H 0.07 2.01 6.32 -2.38 -0.02 2.00 15 24 H 0.14 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.15 4.88 8.14 -2.38 -0.02 4.86 15 26 H 0.29 12.35 8.29 -92.70 -0.77 11.58 15 Total: -1.00 -55.66 248.86 7.35 -48.31 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.24 Total: 9.02 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 3.38 Total: 5.38 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -0.71 Total: -80.49 kcal Atomic # 9 Polarization: -17.23 SS G_CDS: 1.42 Total: -15.81 kcal Atomic # 14 Polarization: 31.55 SS G_CDS: 2.03 Total: 33.58 kcal Total: -55.66 7.35 -48.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238477411.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.922 kcal (2) G-P(sol) polarization free energy of solvation -55.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds