Wall clock time and date at job start Mon Mar 30 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38197 * 119.23965 * 2 1 4 4 C 1.39671 * 119.24120 * 180.02562 * 3 2 1 5 5 C 1.43193 * 121.06303 * 179.97438 * 4 3 2 6 6 N 4.81001 * 134.92409 * 359.97438 * 2 1 3 7 7 C 1.42411 * 117.87645 * 0.02562 * 4 3 2 8 8 C 1.40764 * 120.76889 * 179.97438 * 7 4 3 9 9 H 1.08001 * 119.99737 * 136.86622 * 8 7 4 10 10 C 1.40292 * 120.00109 * 316.86397 * 8 7 4 11 11 N 1.30639 * 119.99700 * 337.04784 * 10 8 7 12 12 Si 1.86798 * 119.99888 * 157.04039 * 10 8 7 13 13 H 1.48502 * 109.46901 * 180.02562 * 12 10 8 14 14 H 1.48497 * 109.47397 * 300.00325 * 12 10 8 15 15 H 1.48498 * 109.47049 * 60.00609 * 12 10 8 16 16 C 1.40858 * 118.46070 * 0.25024 * 7 4 3 17 17 C 1.50698 * 119.74065 * 179.72646 * 16 7 4 18 18 F 1.39905 * 109.46784 * 300.00169 * 17 16 7 19 19 F 1.39902 * 109.47141 * 59.99801 * 17 16 7 20 20 N 1.31328 * 120.52075 * 359.47433 * 16 7 4 21 21 H 1.08994 * 109.47019 * 90.00096 * 1 2 3 22 22 H 1.08998 * 109.47245 * 210.00125 * 1 2 3 23 23 H 1.08997 * 109.46930 * 329.99923 * 1 2 3 24 24 H 1.07994 * 120.38258 * 0.02562 * 3 2 1 25 25 H 0.97002 * 120.00267 * 354.20959 * 11 10 8 26 26 H 1.08992 * 109.47277 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1821 1.2059 0.0000 4 6 3.5788 1.2059 -0.0005 5 6 4.3176 2.4325 -0.0011 6 7 4.9038 3.4057 -0.0015 7 6 4.2447 -0.0529 -0.0016 8 6 5.6506 -0.1239 -0.0028 9 1 6.1559 -0.8331 0.6360 10 6 6.3952 0.7266 -0.8337 11 7 5.8442 1.2467 -1.8979 12 14 8.1744 1.1153 -0.4182 13 1 8.7339 2.0306 -1.4450 14 1 8.2405 1.7675 0.9143 15 1 8.9632 -0.1426 -0.3933 16 6 3.4640 -1.2253 -0.0075 17 6 4.1387 -2.5728 -0.0151 18 9 4.9367 -2.6883 -1.1584 19 9 4.9378 -2.7006 1.1261 20 7 2.1527 -1.1534 -0.0015 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6360 2.1376 0.0004 25 1 4.9492 0.9801 -2.1602 26 1 3.3826 -3.3577 -0.0194 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238477922.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:45 Heat of formation + Delta-G solvation = -78.782018 kcal Electronic energy + Delta-G solvation = -16644.291838 eV Core-core repulsion = 13550.212109 eV Total energy + Delta-G solvation = -3094.079729 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.72885 -47.72774 -40.89526 -37.69880 -36.15262 -33.75014 -33.10999 -29.65862 -28.11621 -25.81072 -24.71028 -22.64701 -20.33722 -19.14936 -18.31329 -18.00226 -17.33831 -16.67940 -16.38057 -15.80926 -15.50509 -14.79585 -14.60111 -14.52667 -14.24142 -14.13289 -13.95380 -13.75987 -13.60401 -13.02971 -12.94227 -12.78349 -12.71771 -12.24943 -12.09193 -11.53853 -11.22386 -10.43536 -10.40195 -9.78105 -9.33206 -6.80732 -0.04969 0.40924 1.36365 1.46036 1.62192 1.85997 2.13845 2.18863 2.57017 2.85057 3.14168 3.21512 3.38306 3.90338 4.19118 4.25735 4.34143 4.52795 4.57651 4.87967 5.00677 5.12731 5.25946 5.28782 5.52963 5.70159 5.86483 6.21486 6.48441 6.73815 7.21514 7.83744 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.013068 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.811800 B = 2142.095765 C = 3135.914495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.005 4.005 3 C -0.057 4.057 4 C -0.130 4.130 5 C 0.296 3.704 6 N -0.479 5.479 7 C 0.082 3.918 8 C -0.520 4.520 9 H 0.094 0.906 10 C 0.018 3.982 11 N -0.790 5.790 12 Si 1.086 2.914 13 H -0.273 1.273 14 H -0.270 1.270 15 H -0.243 1.243 16 C -0.056 4.056 17 C 0.346 3.654 18 F -0.208 7.208 19 F -0.210 7.210 20 N -0.423 5.423 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.151 0.849 25 H 0.283 0.717 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 -4.829 2.441 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.141 4.141 3 C -0.079 4.079 4 C -0.141 4.141 5 C -0.016 4.016 6 N -0.157 5.157 7 C 0.075 3.925 8 C -0.548 4.548 9 H 0.112 0.888 10 C -0.202 4.202 11 N -0.411 5.411 12 Si 0.904 3.096 13 H -0.198 1.198 14 H -0.195 1.195 15 H -0.167 1.167 16 C -0.201 4.201 17 C 0.292 3.708 18 F -0.190 7.190 19 F -0.191 7.191 20 N -0.132 5.132 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.169 0.831 25 H 0.095 0.905 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.474 -3.163 1.905 5.801 hybrid contribution -0.702 -0.345 0.315 0.843 sum -5.176 -3.507 2.220 6.635 Atomic orbital electron populations 1.20461 0.86116 1.03602 1.02942 1.21041 0.97876 0.86453 1.08731 1.21974 0.91339 1.00411 0.94174 1.16644 0.92722 0.86973 1.17776 1.25506 0.92029 0.92112 0.91986 1.80961 1.09057 1.13669 1.11983 1.18298 0.94613 0.90427 0.89174 1.20754 0.91526 1.20119 1.22402 0.88799 1.28039 1.10001 0.90328 0.91810 1.70535 1.17138 1.33764 1.19646 0.83395 0.69973 0.78861 0.77381 1.19789 1.19504 1.16656 1.21707 0.90120 0.94414 1.13894 1.19934 0.84614 0.95725 0.70533 1.92953 1.77292 1.96904 1.51823 1.92919 1.77269 1.96818 1.52128 1.66409 1.08864 1.30972 1.06991 0.90764 0.90913 0.89547 0.83128 0.90465 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.15 71.24 0.72 -1.06 15 2 C -0.01 -0.18 6.78 42.50 0.29 0.11 15 3 C -0.06 -2.10 9.46 22.61 0.21 -1.88 15 4 C -0.13 -5.88 5.07 -20.65 -0.10 -5.98 15 5 C 0.30 14.25 11.79 88.33 1.04 15.29 15 6 N -0.48 -23.85 18.54 19.00 0.35 -23.49 15 7 C 0.08 3.93 4.84 -20.98 -0.10 3.83 15 8 C -0.52 -26.02 7.18 23.39 0.17 -25.85 15 9 H 0.09 4.70 6.63 -2.91 -0.02 4.68 15 10 C 0.02 0.92 4.01 85.37 0.34 1.26 15 11 N -0.79 -41.57 11.92 21.89 0.26 -41.31 15 12 Si 1.09 45.07 29.99 68.60 2.06 47.13 15 13 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 14 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 15 H -0.24 -9.01 7.11 99.48 0.71 -8.30 15 16 C -0.06 -2.41 6.34 43.27 0.27 -2.14 15 17 C 0.35 13.30 5.13 71.24 0.37 13.66 15 18 F -0.21 -8.81 16.58 44.97 0.75 -8.07 15 19 F -0.21 -8.42 15.79 44.97 0.71 -7.71 15 20 N -0.42 -16.55 10.10 -170.21 -1.72 -18.27 15 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.09 1.67 8.07 -2.39 -0.02 1.65 15 24 H 0.15 4.52 8.06 -2.91 -0.02 4.50 15 25 H 0.28 15.27 7.19 -92.71 -0.67 14.60 15 26 H 0.15 4.44 8.11 -2.39 -0.02 4.42 15 Total: -1.00 -57.72 249.34 6.95 -50.77 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.33 Total: 3.70 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.21 Total: -2.75 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.11 Total: -83.07 kcal Atomic # 9 Polarization: -17.23 SS G_CDS: 1.46 Total: -15.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.06 Total: 47.13 kcal Total: -57.72 6.95 -50.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238477922.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.012 kcal (2) G-P(sol) polarization free energy of solvation -57.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds