Wall clock time and date at job start Mon Mar 30 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38437 * 120.13541 * 2 1 4 4 C 1.39845 * 118.44552 * 179.97438 * 3 2 1 5 5 C 1.43198 * 120.67309 * 180.02562 * 4 3 2 6 6 N 4.80415 * 136.20022 * 0.02562 * 2 1 3 7 7 C 1.41987 * 118.65806 * 359.97438 * 4 3 2 8 8 C 1.40872 * 119.94530 * 180.02562 * 7 4 3 9 9 H 1.07999 * 119.99569 * 0.02562 * 8 7 4 10 10 C 1.40278 * 119.99876 * 180.02562 * 8 7 4 11 11 N 1.30606 * 120.00540 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47331 * 89.99769 * 12 10 8 14 14 H 1.48504 * 109.47433 * 209.99797 * 12 10 8 15 15 H 1.48501 * 109.47178 * 329.99808 * 12 10 8 16 16 N 1.33614 * 120.11350 * 359.97438 * 7 4 3 17 17 C 1.31308 * 121.66699 * 359.76811 * 16 7 4 18 18 C 1.50700 * 119.30929 * 180.24034 * 17 16 7 19 19 F 1.39894 * 109.47178 * 307.68702 * 18 17 16 20 20 F 1.39910 * 109.46799 * 67.68424 * 18 17 16 21 21 H 1.09003 * 109.46704 * 95.79154 * 1 2 3 22 22 H 1.08994 * 109.47023 * 335.79626 * 1 2 3 23 23 H 1.08999 * 109.46943 * 215.79315 * 1 2 3 24 24 H 1.08005 * 120.77919 * 359.94644 * 3 2 1 25 25 H 0.96992 * 120.00299 * 180.02562 * 11 10 8 26 26 H 1.08998 * 109.47137 * 187.68259 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2021 1.1973 0.0000 4 6 3.5999 1.1560 0.0005 5 6 4.3664 2.3656 0.0011 6 7 4.9745 3.3251 0.0015 7 6 4.2438 -0.1095 0.0016 8 6 5.6507 -0.1826 0.0028 9 1 6.2384 0.7234 0.0032 10 6 6.2880 -1.4323 0.0033 11 7 5.5772 -2.5280 0.0022 12 14 8.1535 -1.5293 0.0055 13 1 8.6462 -1.5552 1.4061 14 1 8.5857 -2.7658 -0.6942 15 1 8.7116 -0.3441 -0.6937 16 7 3.5177 -1.2311 0.0026 17 6 2.2050 -1.2024 0.0072 18 6 1.4387 -2.5001 0.0136 19 9 1.8923 -3.3146 -1.0294 20 9 1.6373 -3.1527 1.2351 21 1 -0.3633 -0.1037 -1.0225 22 1 -0.3633 0.9373 0.4213 23 1 -0.3633 -0.8336 0.6010 24 1 1.6771 2.1411 -0.0009 25 1 6.0179 -3.3920 0.0030 26 1 0.3766 -2.2955 -0.1207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238477953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:42 Heat of formation + Delta-G solvation = -53.901540 kcal Electronic energy + Delta-G solvation = -16310.060477 eV Core-core repulsion = 13217.059647 eV Total energy + Delta-G solvation = -3093.000830 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.18750 -46.20882 -38.91186 -35.51338 -34.44490 -32.20921 -31.50780 -28.08162 -26.63455 -24.55282 -21.74832 -21.44034 -18.18053 -17.18524 -16.80704 -16.49870 -16.30579 -15.10247 -14.73123 -13.58010 -13.49809 -13.05927 -12.91442 -12.69393 -12.60476 -12.58839 -12.17631 -11.82373 -11.79363 -11.77488 -11.45717 -11.28208 -11.16977 -11.05620 -10.54595 -9.99625 -9.65924 -8.60373 -8.14402 -7.96904 -6.85843 -4.97569 1.81068 2.48546 2.93053 2.95049 2.98763 3.69496 3.74953 4.00154 4.38052 4.40616 4.78757 5.09614 5.29737 5.32709 5.71452 5.81048 5.83427 5.92941 6.10174 6.25060 6.39584 6.57359 6.78765 7.05230 7.15398 7.45833 7.76457 8.09839 8.38061 8.62137 9.47176 9.84200 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.011596 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.005438 B = 2414.021629 C = 3690.508429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.272 4.272 3 C 0.015 3.985 4 C -0.215 4.215 5 C 0.301 3.699 6 N -0.499 5.499 7 C 0.271 3.729 8 C -0.385 4.385 9 H 0.093 0.907 10 C 0.060 3.940 11 N -0.682 5.682 12 Si 0.915 3.085 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.257 1.257 16 N -0.436 5.436 17 C 0.113 3.887 18 C 0.324 3.676 19 F -0.198 7.198 20 F -0.202 7.202 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.113 0.887 25 H 0.285 0.715 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -2.317 -0.178 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.278 4.278 3 C -0.012 4.012 4 C -0.225 4.225 5 C -0.010 4.010 6 N -0.179 5.179 7 C 0.149 3.851 8 C -0.413 4.413 9 H 0.111 0.889 10 C -0.170 4.170 11 N -0.299 5.299 12 Si 0.738 3.262 13 H -0.188 1.188 14 H -0.194 1.194 15 H -0.181 1.181 16 N -0.146 5.146 17 C -0.043 4.043 18 C 0.270 3.730 19 F -0.179 7.179 20 F -0.183 7.183 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.097 0.903 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.003 -1.905 -0.180 5.356 hybrid contribution 0.200 0.200 0.029 0.284 sum -4.803 -1.705 -0.150 5.099 Atomic orbital electron populations 1.20454 0.92170 1.01353 1.00591 1.19551 0.95309 0.92686 1.20222 1.20718 0.91674 0.96575 0.92259 1.16743 0.91630 0.88355 1.25768 1.25572 0.92075 0.91926 0.91379 1.81047 1.09863 1.12404 1.14548 1.18285 0.93304 0.84415 0.89132 1.19924 0.90256 0.94091 1.37029 0.88870 1.26261 1.01792 0.95210 0.93714 1.70004 1.38009 0.98922 1.23014 0.86156 0.80701 0.79486 0.79877 1.18773 1.19431 1.18057 1.68486 1.03204 1.29021 1.13867 1.21444 0.92841 0.92183 0.97814 1.20532 0.97618 0.83052 0.71798 1.92974 1.91675 1.74968 1.58270 1.92969 1.96825 1.83004 1.45528 0.92863 0.92515 0.92955 0.86874 0.90290 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.12 36.01 0.33 -0.88 15 2 C -0.27 -5.10 5.91 -104.25 -0.62 -5.72 15 3 C 0.01 0.29 9.54 -38.91 -0.37 -0.08 15 4 C -0.22 -4.89 5.81 -105.94 -0.62 -5.50 15 5 C 0.30 6.86 13.94 -22.47 -0.31 6.55 15 6 N -0.50 -11.63 18.54 41.84 0.78 -10.85 15 7 C 0.27 6.82 6.58 -84.66 -0.56 6.26 15 8 C -0.38 -9.64 8.78 -37.82 -0.33 -9.97 15 9 H 0.09 2.29 6.88 -52.49 -0.36 1.93 15 10 C 0.06 1.43 5.50 -17.31 -0.10 1.33 15 11 N -0.68 -16.78 11.46 55.56 0.64 -16.15 15 12 Si 0.92 17.59 29.56 -169.99 -5.03 12.56 15 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 14 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 15 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 16 N -0.44 -10.95 7.72 -7.12 -0.05 -11.00 15 17 C 0.11 2.42 6.24 -82.52 -0.51 1.91 15 18 C 0.32 6.03 5.31 36.01 0.19 6.22 15 19 F -0.20 -4.04 17.29 2.25 0.04 -4.00 15 20 F -0.20 -4.03 17.32 2.25 0.04 -4.00 15 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.06 0.69 8.05 -51.93 -0.42 0.28 15 23 H 0.05 0.64 6.55 -51.93 -0.34 0.30 15 24 H 0.11 1.87 8.06 -52.48 -0.42 1.45 15 25 H 0.29 6.34 8.29 -40.82 -0.34 6.00 15 26 H 0.11 1.58 5.71 -51.93 -0.30 1.28 15 LS Contribution 251.61 15.07 3.79 3.79 Total: -1.00 -27.74 251.61 -4.09 -31.83 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -1.39 Total: -2.30 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.90 Total: 0.11 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.36 Total: -38.00 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.08 Total: -7.99 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.74 -4.09 -31.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238477953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.071 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds