Wall clock time and date at job start Mon Mar 30 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38437 * 120.13541 * 2 1 4 4 C 1.39845 * 118.44552 * 179.97438 * 3 2 1 5 5 C 1.43198 * 120.67309 * 180.02562 * 4 3 2 6 6 N 4.80415 * 136.20022 * 0.02562 * 2 1 3 7 7 C 1.41987 * 118.65806 * 359.97438 * 4 3 2 8 8 C 1.40872 * 119.94530 * 180.02562 * 7 4 3 9 9 H 1.07999 * 119.99569 * 0.02562 * 8 7 4 10 10 C 1.40278 * 119.99876 * 180.02562 * 8 7 4 11 11 N 1.30606 * 120.00540 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47331 * 89.99769 * 12 10 8 14 14 H 1.48504 * 109.47433 * 209.99797 * 12 10 8 15 15 H 1.48501 * 109.47178 * 329.99808 * 12 10 8 16 16 N 1.33614 * 120.11350 * 359.97438 * 7 4 3 17 17 C 1.31308 * 121.66699 * 359.76811 * 16 7 4 18 18 C 1.50700 * 119.30929 * 180.24034 * 17 16 7 19 19 F 1.39894 * 109.47178 * 307.68702 * 18 17 16 20 20 F 1.39910 * 109.46799 * 67.68424 * 18 17 16 21 21 H 1.09003 * 109.46704 * 95.79154 * 1 2 3 22 22 H 1.08994 * 109.47023 * 335.79626 * 1 2 3 23 23 H 1.08999 * 109.46943 * 215.79315 * 1 2 3 24 24 H 1.08005 * 120.77919 * 359.94644 * 3 2 1 25 25 H 0.96992 * 120.00299 * 180.02562 * 11 10 8 26 26 H 1.08998 * 109.47137 * 187.68259 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2021 1.1973 0.0000 4 6 3.5999 1.1560 0.0005 5 6 4.3664 2.3656 0.0011 6 7 4.9745 3.3251 0.0015 7 6 4.2438 -0.1095 0.0016 8 6 5.6507 -0.1826 0.0028 9 1 6.2384 0.7234 0.0032 10 6 6.2880 -1.4323 0.0033 11 7 5.5772 -2.5280 0.0022 12 14 8.1535 -1.5293 0.0055 13 1 8.6462 -1.5552 1.4061 14 1 8.5857 -2.7658 -0.6942 15 1 8.7116 -0.3441 -0.6937 16 7 3.5177 -1.2311 0.0026 17 6 2.2050 -1.2024 0.0072 18 6 1.4387 -2.5001 0.0136 19 9 1.8923 -3.3146 -1.0294 20 9 1.6373 -3.1527 1.2351 21 1 -0.3633 -0.1037 -1.0225 22 1 -0.3633 0.9373 0.4213 23 1 -0.3633 -0.8336 0.6010 24 1 1.6771 2.1411 -0.0009 25 1 6.0179 -3.3920 0.0030 26 1 0.3766 -2.2955 -0.1207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238477953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:42 Heat of formation + Delta-G solvation = -69.697967 kcal Electronic energy + Delta-G solvation = -16310.745462 eV Core-core repulsion = 13217.059647 eV Total energy + Delta-G solvation = -3093.685815 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.71327 -47.75329 -40.59078 -37.30949 -36.12516 -33.79959 -33.19237 -29.66507 -28.18461 -26.09630 -23.35369 -23.10014 -19.87476 -18.85910 -18.36714 -18.03360 -17.91474 -16.69264 -16.40749 -15.17582 -15.10659 -14.62482 -14.49873 -14.31221 -14.15073 -14.03188 -13.73250 -13.42961 -13.38264 -13.24421 -13.04215 -12.81610 -12.76247 -12.71167 -12.06357 -11.52758 -11.31610 -10.28006 -9.83282 -9.65251 -8.56744 -6.77162 0.09003 0.87648 1.34092 1.43465 1.48108 1.93631 2.11075 2.25067 2.65367 2.93806 3.29847 3.49097 3.58523 3.78229 4.30883 4.34317 4.45243 4.61919 4.68428 4.87177 5.07345 5.11090 5.28511 5.43303 5.60472 5.87773 5.96636 6.36056 6.60701 6.82438 7.76609 8.15736 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.011596 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.005438 B = 2414.021629 C = 3690.508429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.248 4.248 3 C 0.013 3.987 4 C -0.232 4.232 5 C 0.308 3.692 6 N -0.515 5.515 7 C 0.251 3.749 8 C -0.429 4.429 9 H 0.083 0.917 10 C 0.027 3.973 11 N -0.721 5.721 12 Si 0.982 3.018 13 H -0.258 1.258 14 H -0.257 1.257 15 H -0.262 1.262 16 N -0.476 5.476 17 C 0.087 3.913 18 C 0.321 3.679 19 F -0.212 7.212 20 F -0.213 7.213 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.150 0.850 25 H 0.290 0.710 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -2.072 -0.214 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.254 4.254 3 C -0.014 4.014 4 C -0.242 4.242 5 C -0.002 4.002 6 N -0.194 5.194 7 C 0.127 3.873 8 C -0.458 4.458 9 H 0.101 0.899 10 C -0.199 4.199 11 N -0.340 5.340 12 Si 0.801 3.199 13 H -0.183 1.183 14 H -0.181 1.181 15 H -0.186 1.186 16 N -0.187 5.187 17 C -0.066 4.066 18 C 0.268 3.732 19 F -0.193 7.193 20 F -0.194 7.194 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.167 0.833 25 H 0.102 0.898 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.026 -1.663 -0.214 7.223 hybrid contribution 0.592 0.193 0.042 0.624 sum -6.434 -1.470 -0.172 6.602 Atomic orbital electron populations 1.20613 0.87731 1.03621 1.02772 1.20173 0.98323 0.91165 1.15709 1.21181 0.90435 0.98652 0.91106 1.16965 0.93243 0.87446 1.26533 1.25660 0.91778 0.91804 0.90950 1.81030 1.10065 1.13066 1.15246 1.18603 0.93847 0.85518 0.89302 1.20047 0.90892 0.94535 1.40316 0.89875 1.26987 1.05869 0.94386 0.92692 1.70064 1.39733 0.99417 1.24814 0.85191 0.75265 0.79474 0.79932 1.18283 1.18085 1.18598 1.68446 1.05162 1.29488 1.15557 1.22208 0.92380 0.94781 0.97270 1.21136 0.99805 0.81396 0.70909 1.92943 1.92139 1.75296 1.58929 1.92945 1.97051 1.83124 1.46296 0.90485 0.90255 0.90873 0.83252 0.89837 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.12 71.24 0.65 -1.32 15 2 C -0.25 -8.51 5.91 -19.63 -0.12 -8.63 15 3 C 0.01 0.49 9.54 22.71 0.22 0.70 15 4 C -0.23 -10.53 5.81 -20.72 -0.12 -10.65 15 5 C 0.31 14.08 13.94 88.33 1.23 15.31 15 6 N -0.51 -23.98 18.54 19.00 0.35 -23.63 15 7 C 0.25 12.93 6.58 40.45 0.27 13.20 15 8 C -0.43 -22.39 8.78 23.41 0.21 -22.19 15 9 H 0.08 4.31 6.88 -2.91 -0.02 4.29 15 10 C 0.03 1.32 5.50 85.37 0.47 1.78 15 11 N -0.72 -36.71 11.46 21.88 0.25 -36.46 15 12 Si 0.98 37.07 29.56 68.60 2.03 39.10 15 13 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 14 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 16 N -0.48 -24.20 7.72 -176.44 -1.36 -25.56 15 17 C 0.09 3.61 6.24 42.83 0.27 3.87 15 18 C 0.32 11.20 5.31 71.24 0.38 11.58 15 19 F -0.21 -8.44 17.29 44.97 0.78 -7.66 15 20 F -0.21 -8.21 17.32 44.97 0.78 -7.43 15 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.08 1.45 8.05 -2.39 -0.02 1.43 15 23 H 0.07 1.34 6.55 -2.39 -0.02 1.33 15 24 H 0.15 4.34 8.06 -2.91 -0.02 4.31 15 25 H 0.29 13.33 8.29 -92.71 -0.77 12.56 15 26 H 0.17 3.94 5.71 -2.39 -0.01 3.93 15 Total: -1.00 -62.55 251.61 7.51 -55.04 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.24 Total: 2.93 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.45 Total: 3.67 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -0.76 Total: -85.65 kcal Atomic # 9 Polarization: -16.65 SS G_CDS: 1.56 Total: -15.09 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -62.55 7.51 -55.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238477953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.659 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds