Wall clock time and date at job start Mon Mar 30 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31112 * 119.78633 * 2 1 4 4 C 1.33168 * 121.73451 * 180.02562 * 3 2 1 5 5 C 1.43199 * 119.46327 * 180.02562 * 4 3 2 6 6 N 4.69219 * 132.47636 * 0.02562 * 2 1 3 7 7 C 1.39985 * 121.07912 * 0.02562 * 4 3 2 8 8 C 1.50706 * 120.27506 * 180.02562 * 7 4 3 9 9 F 1.39897 * 109.46855 * 119.97958 * 8 7 4 10 10 F 1.39895 * 109.46855 * 239.97698 * 8 7 4 11 11 C 1.36681 * 119.45250 * 359.97438 * 7 4 3 12 12 C 1.41093 * 119.79095 * 180.02562 * 2 1 3 13 13 C 1.40963 * 120.55095 * 359.97438 * 12 2 1 14 14 H 1.08001 * 119.99950 * 24.91207 * 13 12 2 15 15 C 1.40234 * 120.00407 * 204.92426 * 13 12 2 16 16 N 1.30660 * 119.99679 * 14.53861 * 15 13 12 17 17 Si 1.86797 * 120.00012 * 194.54687 * 15 13 12 18 18 H 1.48499 * 109.47445 * 89.99312 * 17 15 13 19 19 H 1.48510 * 109.47010 * 209.99615 * 17 15 13 20 20 H 1.48502 * 109.47096 * 329.99062 * 17 15 13 21 21 H 1.08999 * 109.47424 * 90.00016 * 1 2 3 22 22 H 1.09004 * 109.46697 * 209.99698 * 1 2 3 23 23 H 1.08996 * 109.47682 * 329.99825 * 1 2 3 24 24 H 1.08995 * 109.46639 * 359.97438 * 8 7 4 25 25 H 1.07995 * 120.80175 * 179.72674 * 11 7 4 26 26 H 0.96994 * 119.99686 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1379 0.0000 4 6 3.4893 1.1832 -0.0005 5 6 4.1508 2.4532 0.0001 6 7 4.6756 3.4607 0.0015 7 6 4.2522 0.0095 -0.0016 8 6 5.7576 0.0819 -0.0016 9 9 6.2550 -0.5551 1.1403 10 9 6.2549 -0.5539 -1.1442 11 6 3.6207 -1.2026 -0.0016 12 6 2.2080 -1.2245 -0.0005 13 6 1.5105 -2.4494 -0.0006 14 1 0.5060 -2.4988 -0.3942 15 6 2.1208 -3.6039 0.5107 16 7 3.2022 -3.5040 1.2372 17 14 1.3877 -5.2843 0.1530 18 1 1.9783 -5.8262 -1.0970 19 1 1.6849 -6.2042 1.2804 20 1 -0.0832 -5.1585 -0.0084 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 6.0710 1.1258 -0.0011 25 1 4.1878 -2.1217 -0.0069 26 1 3.6245 -4.3025 1.5905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238482200.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:24 Heat of formation + Delta-G solvation = -73.383918 kcal Electronic energy + Delta-G solvation = -16260.222554 eV Core-core repulsion = 13166.376904 eV Total energy + Delta-G solvation = -3093.845650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02604 -48.01579 -40.74589 -37.58942 -36.17710 -34.34030 -32.83332 -29.70842 -28.29501 -26.28372 -24.29288 -22.19094 -20.00016 -19.43692 -18.58295 -18.26951 -17.66141 -17.16120 -16.18611 -15.45602 -15.24618 -14.91790 -14.78818 -14.41458 -14.22628 -14.16952 -13.97648 -13.66985 -13.50664 -13.35819 -12.91865 -12.76579 -12.68335 -12.54272 -12.14255 -11.64647 -11.34107 -10.49263 -10.27208 -9.66683 -8.92928 -6.63877 0.00687 0.75854 1.41799 1.46321 1.60391 1.62259 1.99201 2.14054 2.66615 2.72267 2.99371 3.17118 3.39002 3.61351 4.05576 4.28099 4.42287 4.65181 4.87872 4.96248 5.09690 5.14994 5.32525 5.39258 5.68854 5.72460 6.22727 6.45086 6.45217 6.55904 7.40214 7.97329 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.009679 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.591040 B = 2892.116840 C = 3804.754766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.018 3.982 3 N -0.433 5.433 4 C 0.005 3.995 5 C 0.303 3.697 6 N -0.476 5.476 7 C -0.146 4.146 8 C 0.321 3.679 9 F -0.204 7.204 10 F -0.204 7.204 11 C -0.123 4.123 12 C 0.049 3.951 13 C -0.402 4.402 14 H 0.120 0.880 15 C 0.030 3.970 16 N -0.781 5.781 17 Si 0.995 3.005 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.241 1.241 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -4.830 -1.435 5.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 N -0.143 5.143 4 C -0.129 4.129 5 C -0.009 4.009 6 N -0.156 5.156 7 C -0.151 4.151 8 C 0.266 3.734 9 F -0.185 7.185 10 F -0.185 7.185 11 C -0.147 4.147 12 C 0.043 3.957 13 C -0.429 4.429 14 H 0.138 0.862 15 C -0.192 4.192 16 N -0.403 5.403 17 Si 0.814 3.186 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.164 1.164 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.147 0.853 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.850 -2.605 -1.269 3.438 hybrid contribution 0.565 -1.760 0.087 1.850 sum -1.285 -4.365 -1.182 4.701 Atomic orbital electron populations 1.20391 0.87193 1.02757 1.02488 1.21688 0.97389 0.86711 1.07511 1.66759 1.07002 1.31420 1.09071 1.15219 0.89160 0.84725 1.23833 1.25298 0.92230 0.91865 0.91534 1.81107 1.10268 1.10055 1.14174 1.20461 0.93752 0.94960 1.05953 1.20328 0.88897 0.93164 0.70965 1.92974 1.88828 1.85079 1.51611 1.92957 1.88902 1.85149 1.51504 1.21206 0.95429 0.95625 1.02448 1.18824 0.92171 0.94754 0.89978 1.20425 1.02409 0.91383 1.28688 0.86212 1.27228 0.94281 1.06165 0.91559 1.69724 1.15976 1.35128 1.19445 0.84955 0.80567 0.74064 0.79040 1.18625 1.19420 1.16416 0.90758 0.89999 0.91742 0.86285 0.85342 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 9.58 71.24 0.68 -1.70 15 2 C 0.02 0.78 6.86 43.37 0.30 1.08 15 3 N -0.43 -19.72 10.17 -174.95 -1.78 -21.50 15 4 C 0.01 0.23 6.60 40.61 0.27 0.50 15 5 C 0.30 12.95 13.70 88.33 1.21 14.16 15 6 N -0.48 -20.19 18.54 19.00 0.35 -19.84 15 7 C -0.15 -6.48 5.38 -19.80 -0.11 -6.59 15 8 C 0.32 12.69 5.30 71.24 0.38 13.07 15 9 F -0.20 -8.36 17.26 44.97 0.78 -7.58 15 10 F -0.20 -8.04 17.26 44.97 0.78 -7.26 15 11 C -0.12 -5.78 8.28 22.65 0.19 -5.59 15 12 C 0.05 2.22 5.59 -21.16 -0.12 2.10 15 13 C -0.40 -16.59 8.17 23.42 0.19 -16.40 15 14 H 0.12 4.34 6.84 -2.91 -0.02 4.32 15 15 C 0.03 1.18 5.23 85.35 0.45 1.62 15 16 N -0.78 -33.59 10.82 21.87 0.24 -33.35 15 17 Si 0.99 29.22 29.59 68.60 2.03 31.25 15 18 H -0.26 -7.71 7.11 99.48 0.71 -7.00 15 19 H -0.27 -7.81 7.11 99.48 0.71 -7.10 15 20 H -0.24 -6.58 7.11 99.48 0.71 -5.87 15 21 H 0.07 2.21 8.14 -2.39 -0.02 2.20 15 22 H 0.08 2.56 6.76 -2.38 -0.02 2.54 15 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.12 4.26 6.44 -2.39 -0.02 4.24 15 25 H 0.13 6.24 6.17 -2.91 -0.02 6.22 15 26 H 0.30 11.72 8.29 -92.71 -0.77 10.96 15 Total: -1.00 -50.58 250.42 7.07 -43.51 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.24 Total: 12.53 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.44 Total: 2.25 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.19 Total: -74.69 kcal Atomic # 9 Polarization: -16.40 SS G_CDS: 1.55 Total: -14.84 kcal Atomic # 14 Polarization: 29.22 SS G_CDS: 2.03 Total: 31.25 kcal Total: -50.58 7.07 -43.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238482200.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.875 kcal (2) G-P(sol) polarization free energy of solvation -50.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds