Wall clock time and date at job start Mon Mar 30 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31112 * 119.79368 * 2 1 4 4 C 1.33166 * 121.73367 * 179.97438 * 3 2 1 5 5 C 1.43198 * 119.46009 * 180.02562 * 4 3 2 6 6 N 4.69212 * 132.48376 * 0.02562 * 2 1 3 7 7 C 1.39991 * 121.07919 * 359.72319 * 4 3 2 8 8 C 1.36676 * 119.45038 * 0.58135 * 7 4 3 9 9 C 1.50701 * 120.79492 * 179.71081 * 8 7 4 10 10 F 1.39901 * 109.47064 * 119.72048 * 9 8 7 11 11 F 1.39901 * 109.47196 * 239.71393 * 9 8 7 12 12 C 1.41101 * 119.78523 * 180.02562 * 2 1 3 13 13 C 1.40972 * 120.54915 * 359.97438 * 12 2 1 14 14 H 1.07998 * 120.00088 * 131.15438 * 13 12 2 15 15 C 1.40231 * 119.99536 * 311.15531 * 13 12 2 16 16 N 1.30651 * 120.00313 * 339.83499 * 15 13 12 17 17 Si 1.86799 * 119.99522 * 159.83432 * 15 13 12 18 18 H 1.48503 * 109.47250 * 90.00204 * 17 15 13 19 19 H 1.48502 * 109.46973 * 210.00043 * 17 15 13 20 20 H 1.48494 * 109.47552 * 330.00182 * 17 15 13 21 21 H 1.09002 * 109.46990 * 270.03439 * 1 2 3 22 22 H 1.09004 * 109.46377 * 30.03030 * 1 2 3 23 23 H 1.08995 * 109.47537 * 150.03185 * 1 2 3 24 24 H 1.07999 * 120.27324 * 180.30873 * 7 4 3 25 25 H 1.08996 * 109.47142 * 359.71873 * 9 8 7 26 26 H 0.97000 * 120.00188 * 185.10211 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1585 1.1378 0.0000 4 6 3.4894 1.1829 0.0005 5 6 4.1511 2.4528 0.0010 6 7 4.6760 3.4603 0.0015 7 6 4.2522 0.0091 0.0069 8 6 3.6206 -1.2029 0.0006 9 6 4.4119 -2.4854 0.0006 10 9 4.0950 -3.2289 1.1425 11 9 4.0959 -3.2284 -1.1420 12 6 2.2080 -1.2246 -0.0005 13 6 1.5102 -2.4495 -0.0006 14 1 1.7775 -3.2232 -0.7050 15 6 0.4691 -2.6633 0.9142 16 7 0.3911 -1.9362 1.9969 17 14 -0.8063 -3.9878 0.5847 18 1 -0.3531 -5.2705 1.1802 19 1 -2.1014 -3.5900 1.1928 20 1 -0.9783 -4.1558 -0.8806 21 1 -0.3633 0.0006 1.0277 22 1 -0.3632 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5133 24 1 5.3310 0.0609 0.0122 25 1 5.4772 -2.2550 0.0011 26 1 -0.2841 -2.1322 2.6652 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238483393.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:27 Heat of formation + Delta-G solvation = -53.918053 kcal Electronic energy + Delta-G solvation = -16507.793606 eV Core-core repulsion = 13414.792059 eV Total energy + Delta-G solvation = -3093.001546 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.08514 -46.06933 -39.11475 -35.84636 -34.39492 -32.69612 -31.10930 -27.60796 -26.67597 -24.94402 -22.55154 -20.48681 -18.04489 -17.85749 -16.87458 -16.33515 -15.56569 -15.12453 -14.85387 -14.16475 -13.76359 -13.01425 -12.94229 -12.78728 -12.50615 -12.46991 -12.21625 -11.86833 -11.81920 -11.72758 -11.37139 -11.12379 -11.00769 -10.88905 -10.49115 -10.35446 -9.35820 -8.88521 -8.52643 -7.61877 -7.17982 -4.92282 1.80918 2.23270 2.85667 2.92177 2.97195 3.35639 3.64581 3.71482 4.36602 4.49292 4.68184 4.97390 5.10124 5.40010 5.62751 5.93270 6.05023 6.16818 6.46248 6.61607 6.72211 6.74151 6.94773 7.07787 7.17796 7.52003 7.91598 8.13005 8.24238 8.32695 9.08636 9.76440 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.010718 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.552532 B = 2611.894582 C = 3453.920539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.091 3.909 3 N -0.429 5.429 4 C 0.024 3.976 5 C 0.303 3.697 6 N -0.472 5.472 7 C -0.050 4.050 8 C -0.242 4.242 9 C 0.338 3.662 10 F -0.198 7.198 11 F -0.208 7.208 12 C 0.120 3.880 13 C -0.436 4.436 14 H 0.101 0.899 15 C 0.082 3.918 16 N -0.761 5.761 17 Si 0.908 3.092 18 H -0.265 1.265 19 H -0.271 1.271 20 H -0.254 1.254 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -4.918 -1.638 5.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 N -0.140 5.140 4 C -0.108 4.108 5 C -0.010 4.010 6 N -0.151 5.151 7 C -0.073 4.073 8 C -0.248 4.248 9 C 0.285 3.715 10 F -0.179 7.179 11 F -0.189 7.189 12 C 0.113 3.887 13 C -0.465 4.465 14 H 0.119 0.881 15 C -0.141 4.141 16 N -0.384 5.384 17 Si 0.730 3.270 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.178 1.178 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.134 0.866 25 H 0.114 0.886 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.733 -2.492 -1.436 2.968 hybrid contribution -0.285 -1.838 0.141 1.865 sum 0.447 -4.329 -1.295 4.541 Atomic orbital electron populations 1.20488 0.89771 1.00622 1.02257 1.21314 0.95809 0.86737 1.02234 1.66792 1.07309 1.31310 1.08554 1.15522 0.89069 0.85484 1.20697 1.25332 0.92154 0.91918 0.91601 1.81090 1.10351 1.10407 1.13270 1.20829 0.98814 0.91521 0.96131 1.20266 0.95415 0.92731 1.16433 1.19845 0.97042 0.83322 0.71321 1.92986 1.94944 1.78774 1.51172 1.92934 1.94954 1.79225 1.51828 1.18150 0.89963 0.94496 0.86054 1.19697 1.11716 0.99925 1.15134 0.88103 1.25931 0.96856 0.97180 0.94093 1.69687 1.29705 1.33906 1.05100 0.86276 0.79354 0.80579 0.80746 1.18987 1.19512 1.17758 0.90747 0.93529 0.91320 0.86617 0.88633 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 8.49 36.01 0.31 -1.21 15 2 C 0.09 2.08 6.53 -81.81 -0.53 1.55 15 3 N -0.43 -9.92 10.17 -6.65 -0.07 -9.99 15 4 C 0.02 0.52 6.60 -84.71 -0.56 -0.04 15 5 C 0.30 6.34 15.52 -22.47 -0.35 6.00 15 6 N -0.47 -10.05 18.54 41.84 0.78 -9.27 15 7 C -0.05 -0.98 9.36 -39.49 -0.37 -1.35 15 8 C -0.24 -5.05 5.41 -104.03 -0.56 -5.62 15 9 C 0.34 6.23 5.06 36.01 0.18 6.41 15 10 F -0.20 -4.07 16.66 2.25 0.04 -4.03 15 11 F -0.21 -3.99 16.00 2.25 0.04 -3.95 15 12 C 0.12 2.76 5.19 -106.62 -0.55 2.20 15 13 C -0.44 -9.86 6.75 -37.80 -0.26 -10.12 15 14 H 0.10 2.27 6.90 -52.49 -0.36 1.91 15 15 C 0.08 1.76 3.52 -17.31 -0.06 1.70 15 16 N -0.76 -16.99 11.09 55.56 0.62 -16.37 15 17 Si 0.91 16.25 29.61 -169.99 -5.03 11.22 15 18 H -0.27 -4.81 7.11 56.52 0.40 -4.40 15 19 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 20 H -0.25 -4.51 7.11 56.52 0.40 -4.11 15 21 H 0.07 1.56 6.82 -51.93 -0.35 1.21 15 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.07 1.36 6.44 -51.93 -0.33 1.02 15 24 H 0.12 1.83 7.98 -52.49 -0.42 1.41 15 25 H 0.10 1.35 7.92 -51.93 -0.41 0.93 15 26 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 LS Contribution 248.30 15.07 3.74 3.74 Total: -1.00 -25.37 248.30 -4.09 -29.45 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -1.44 Total: -0.33 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.76 Total: -0.47 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 1.32 Total: -35.63 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.07 Total: -7.98 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.37 -4.09 -29.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238483393.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.463 kcal (2) G-P(sol) polarization free energy of solvation -25.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds