Wall clock time and date at job start Mon Mar 30 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31112 * 119.79368 * 2 1 4 4 C 1.33166 * 121.73367 * 179.97438 * 3 2 1 5 5 C 1.43198 * 119.46009 * 180.02562 * 4 3 2 6 6 N 4.69212 * 132.48376 * 0.02562 * 2 1 3 7 7 C 1.39991 * 121.07919 * 359.72319 * 4 3 2 8 8 C 1.36676 * 119.45038 * 0.58135 * 7 4 3 9 9 C 1.50701 * 120.79492 * 179.71081 * 8 7 4 10 10 F 1.39901 * 109.47064 * 119.72048 * 9 8 7 11 11 F 1.39901 * 109.47196 * 239.71393 * 9 8 7 12 12 C 1.41101 * 119.78523 * 180.02562 * 2 1 3 13 13 C 1.40972 * 120.54915 * 359.97438 * 12 2 1 14 14 H 1.07998 * 120.00088 * 131.15438 * 13 12 2 15 15 C 1.40231 * 119.99536 * 311.15531 * 13 12 2 16 16 N 1.30651 * 120.00313 * 339.83499 * 15 13 12 17 17 Si 1.86799 * 119.99522 * 159.83432 * 15 13 12 18 18 H 1.48503 * 109.47250 * 90.00204 * 17 15 13 19 19 H 1.48502 * 109.46973 * 210.00043 * 17 15 13 20 20 H 1.48494 * 109.47552 * 330.00182 * 17 15 13 21 21 H 1.09002 * 109.46990 * 270.03439 * 1 2 3 22 22 H 1.09004 * 109.46377 * 30.03030 * 1 2 3 23 23 H 1.08995 * 109.47537 * 150.03185 * 1 2 3 24 24 H 1.07999 * 120.27324 * 180.30873 * 7 4 3 25 25 H 1.08996 * 109.47142 * 359.71873 * 9 8 7 26 26 H 0.97000 * 120.00188 * 185.10211 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1585 1.1378 0.0000 4 6 3.4894 1.1829 0.0005 5 6 4.1511 2.4528 0.0010 6 7 4.6760 3.4603 0.0015 7 6 4.2522 0.0091 0.0069 8 6 3.6206 -1.2029 0.0006 9 6 4.4119 -2.4854 0.0006 10 9 4.0950 -3.2289 1.1425 11 9 4.0959 -3.2284 -1.1420 12 6 2.2080 -1.2246 -0.0005 13 6 1.5102 -2.4495 -0.0006 14 1 1.7775 -3.2232 -0.7050 15 6 0.4691 -2.6633 0.9142 16 7 0.3911 -1.9362 1.9969 17 14 -0.8063 -3.9878 0.5847 18 1 -0.3531 -5.2705 1.1802 19 1 -2.1014 -3.5900 1.1928 20 1 -0.9783 -4.1558 -0.8806 21 1 -0.3633 0.0006 1.0277 22 1 -0.3632 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5133 24 1 5.3310 0.0609 0.0122 25 1 5.4772 -2.2550 0.0011 26 1 -0.2841 -2.1322 2.6652 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238483393.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:27 Heat of formation + Delta-G solvation = -67.234125 kcal Electronic energy + Delta-G solvation = -16508.371034 eV Core-core repulsion = 13414.792059 eV Total energy + Delta-G solvation = -3093.578975 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.57195 -47.57448 -40.76340 -37.51823 -36.04185 -34.31000 -32.76627 -29.24382 -28.29389 -26.50360 -24.19134 -22.08895 -19.67830 -19.50548 -18.37502 -17.83128 -17.14128 -16.68907 -16.44078 -15.69961 -15.42992 -14.58914 -14.54405 -14.34027 -14.14774 -13.98211 -13.85571 -13.47220 -13.36517 -13.31210 -13.01559 -12.67455 -12.64292 -12.36946 -11.96224 -11.84701 -10.97769 -10.52472 -10.19890 -9.29082 -8.79168 -6.61885 0.14859 0.60827 1.41541 1.46855 1.57999 1.68859 2.01835 2.20843 2.73210 2.91593 3.27169 3.31223 3.61499 3.91660 4.17914 4.46162 4.48600 4.56516 4.85225 4.98168 5.09357 5.10919 5.34393 5.46953 5.53139 5.87820 6.20703 6.47080 6.57808 6.66528 7.39682 8.17860 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.010718 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.552532 B = 2611.894582 C = 3453.920539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.067 3.933 3 N -0.449 5.449 4 C 0.011 3.989 5 C 0.312 3.688 6 N -0.479 5.479 7 C -0.039 4.039 8 C -0.254 4.254 9 C 0.334 3.666 10 F -0.213 7.213 11 F -0.215 7.215 12 C 0.096 3.904 13 C -0.454 4.454 14 H 0.095 0.905 15 C 0.056 3.944 16 N -0.790 5.790 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.261 1.261 20 H -0.252 1.252 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.159 0.841 25 H 0.152 0.848 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -5.476 -1.839 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 N -0.160 5.160 4 C -0.121 4.121 5 C -0.001 4.001 6 N -0.158 5.158 7 C -0.061 4.061 8 C -0.261 4.261 9 C 0.281 3.719 10 F -0.194 7.194 11 F -0.196 7.196 12 C 0.090 3.910 13 C -0.482 4.482 14 H 0.113 0.887 15 C -0.165 4.165 16 N -0.413 5.413 17 Si 0.785 3.215 18 H -0.192 1.192 19 H -0.185 1.185 20 H -0.176 1.176 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.176 0.824 25 H 0.169 0.831 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.323 -3.044 -1.639 3.702 hybrid contribution -0.406 -1.603 0.205 1.666 sum 0.917 -4.647 -1.434 4.949 Atomic orbital electron populations 1.20419 0.88897 1.01208 1.01819 1.21603 0.96738 0.86894 1.03149 1.66765 1.08384 1.31679 1.09152 1.15792 0.88966 0.86350 1.20993 1.25219 0.91886 0.91693 0.91297 1.81099 1.10731 1.10406 1.13575 1.21155 1.00843 0.90109 0.94042 1.20688 0.95142 0.94564 1.15706 1.20323 0.99286 0.81816 0.70457 1.92952 1.95282 1.79080 1.52117 1.92917 1.95231 1.79290 1.52150 1.18493 0.91387 0.94690 0.86478 1.19775 1.12987 0.99829 1.15658 0.88701 1.26536 0.97751 0.98798 0.93403 1.69710 1.30554 1.35243 1.05820 0.85425 0.77447 0.78022 0.80558 1.19151 1.18527 1.17565 0.91609 0.92470 0.91091 0.82365 0.83149 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.72 8.49 71.24 0.61 -2.12 15 2 C 0.07 3.08 6.53 43.37 0.28 3.36 15 3 N -0.45 -20.60 10.17 -174.94 -1.78 -22.38 15 4 C 0.01 0.47 6.60 40.61 0.27 0.74 15 5 C 0.31 12.57 15.52 88.33 1.37 13.94 15 6 N -0.48 -19.60 18.54 19.00 0.35 -19.25 15 7 C -0.04 -1.43 9.36 22.33 0.21 -1.22 15 8 C -0.25 -10.21 5.41 -19.48 -0.11 -10.31 15 9 C 0.33 11.51 5.06 71.24 0.36 11.87 15 10 F -0.21 -8.46 16.66 44.97 0.75 -7.71 15 11 F -0.21 -7.87 16.00 44.97 0.72 -7.15 15 12 C 0.10 4.37 5.19 -21.16 -0.11 4.26 15 13 C -0.45 -20.46 6.75 23.42 0.16 -20.31 15 14 H 0.10 4.28 6.90 -2.91 -0.02 4.26 15 15 C 0.06 2.36 3.52 85.35 0.30 2.66 15 16 N -0.79 -35.20 11.09 21.87 0.24 -34.96 15 17 Si 0.97 32.68 29.61 68.60 2.03 34.72 15 18 H -0.27 -9.05 7.11 99.48 0.71 -8.35 15 19 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 20 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 21 H 0.07 2.79 6.82 -2.39 -0.02 2.77 15 22 H 0.06 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.07 2.81 6.44 -2.39 -0.02 2.80 15 24 H 0.16 4.32 7.98 -2.91 -0.02 4.30 15 25 H 0.15 3.56 7.92 -2.39 -0.02 3.54 15 26 H 0.30 12.04 8.30 -92.71 -0.77 11.27 15 Total: -1.00 -53.38 248.30 6.89 -46.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.24 Total: 7.36 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 3.34 Total: 2.88 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -1.18 Total: -76.58 kcal Atomic # 9 Polarization: -16.33 SS G_CDS: 1.47 Total: -14.86 kcal Atomic # 14 Polarization: 32.68 SS G_CDS: 2.03 Total: 34.72 kcal Total: -53.38 6.89 -46.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238483393.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.744 kcal (2) G-P(sol) polarization free energy of solvation -53.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds