Wall clock time and date at job start Mon Mar 30 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36719 * 120.79492 * 2 1 4 4 C 1.39951 * 119.45042 * 179.70851 * 3 2 1 5 5 C 1.43203 * 119.45782 * 180.27492 * 4 3 2 6 6 N 4.78129 * 135.56430 * 0.29117 * 2 1 3 7 7 N 1.33198 * 121.08013 * 0.58177 * 4 3 2 8 8 C 1.31088 * 121.73376 * 359.72125 * 7 4 3 9 9 C 1.50700 * 119.78815 * 180.02562 * 8 7 4 10 10 F 1.39905 * 109.46783 * 116.31230 * 9 8 7 11 11 F 1.39896 * 109.47426 * 236.30999 * 9 8 7 12 12 C 1.41134 * 120.42151 * 359.97438 * 8 7 4 13 13 C 1.40968 * 120.55058 * 180.02562 * 12 8 7 14 14 H 1.08005 * 119.99760 * 51.56117 * 13 12 8 15 15 C 1.40222 * 119.99894 * 231.56205 * 13 12 8 16 16 N 1.30663 * 119.99761 * 204.10449 * 15 13 12 17 17 Si 1.86798 * 120.00124 * 24.11065 * 15 13 12 18 18 H 1.48497 * 109.47381 * 86.32102 * 17 15 13 19 19 H 1.48502 * 109.46898 * 206.32073 * 17 15 13 20 20 H 1.48499 * 109.47093 * 326.31580 * 17 15 13 21 21 H 1.08999 * 109.47311 * 269.71939 * 1 2 3 22 22 H 1.09010 * 109.47234 * 149.71833 * 1 2 3 23 23 H 1.08999 * 109.46979 * 29.72175 * 1 2 3 24 24 H 1.07997 * 120.27329 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47441 * 356.31377 * 9 8 7 26 26 H 0.96994 * 119.99649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1744 0.0000 4 6 3.6060 1.1416 0.0062 5 6 4.3393 2.3716 0.0122 6 7 4.9210 3.3474 0.0170 7 7 4.2667 -0.0150 0.0005 8 6 3.6407 -1.1667 -0.0056 9 6 4.4322 -2.4490 -0.0113 10 9 4.1786 -3.1587 1.1674 11 9 4.0554 -3.2248 -1.1129 12 6 2.2301 -1.2133 -0.0059 13 6 1.5540 -2.4503 -0.0119 14 1 1.8053 -3.2065 0.7170 15 6 0.5554 -2.6987 -0.9644 16 7 -0.3748 -3.5832 -0.7200 17 14 0.5549 -1.7655 -2.5825 18 1 1.4238 -2.4689 -3.5599 19 1 -0.8304 -1.6949 -3.1127 20 1 1.0708 -0.3907 -2.3611 21 1 -0.3634 -0.0050 1.0276 22 1 -0.3634 -0.8875 -0.5182 23 1 -0.3633 0.8925 -0.5095 24 1 1.6845 2.1196 0.0004 25 1 5.4958 -2.2193 -0.0754 26 1 -1.0654 -3.7554 -1.3790 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238484113.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:27 Heat of formation + Delta-G solvation = -59.120052 kcal Electronic energy + Delta-G solvation = -16609.966966 eV Core-core repulsion = 13516.739844 eV Total energy + Delta-G solvation = -3093.227122 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.67880 -47.68353 -40.99336 -37.57773 -36.28049 -34.47371 -33.13993 -29.41094 -28.30662 -26.82126 -23.97894 -22.28335 -20.06196 -19.30724 -18.42365 -17.96623 -17.39604 -17.25719 -16.53021 -15.52730 -15.44482 -14.90661 -14.57706 -14.43990 -14.39538 -14.08581 -13.97099 -13.70657 -13.48975 -13.39404 -13.23438 -13.06379 -12.69430 -12.24576 -11.97031 -11.68622 -11.27492 -10.44295 -10.24238 -9.65892 -9.00019 -6.65772 -0.09502 0.45919 1.25523 1.36076 1.41809 1.60977 1.86390 2.06344 2.61434 2.69601 3.13241 3.14169 3.45832 3.85677 4.25176 4.34095 4.37517 4.46859 4.66046 4.72476 4.91021 5.07203 5.19446 5.26960 5.62346 5.69468 6.13220 6.31621 6.50072 6.56289 7.03285 8.02801 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.012484 C = 0.009324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.476900 B = 2242.300816 C = 3002.344244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C -0.068 4.068 4 C 0.044 3.956 5 C 0.312 3.688 6 N -0.466 5.466 7 N -0.413 5.413 8 C -0.058 4.058 9 C 0.345 3.655 10 F -0.211 7.211 11 F -0.204 7.204 12 C 0.072 3.928 13 C -0.455 4.455 14 H 0.079 0.921 15 C 0.080 3.920 16 N -0.805 5.805 17 Si 0.918 3.082 18 H -0.275 1.275 19 H -0.250 1.250 20 H -0.229 1.229 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.157 0.843 25 H 0.145 0.855 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 2.765 -1.876 3.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.139 4.139 3 C -0.090 4.090 4 C -0.095 4.095 5 C -0.003 4.003 6 N -0.145 5.145 7 N -0.123 5.123 8 C -0.204 4.204 9 C 0.291 3.709 10 F -0.193 7.193 11 F -0.186 7.186 12 C 0.066 3.934 13 C -0.483 4.483 14 H 0.096 0.904 15 C -0.141 4.141 16 N -0.428 5.428 17 Si 0.738 3.262 18 H -0.201 1.201 19 H -0.173 1.173 20 H -0.151 1.151 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.104 0.896 24 H 0.175 0.825 25 H 0.162 0.838 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.963 4.073 -1.889 4.592 hybrid contribution -1.147 -0.791 -0.399 1.449 sum -0.183 3.281 -2.289 4.005 Atomic orbital electron populations 1.20784 0.89650 1.02386 1.03047 1.20358 0.97371 0.91767 1.04452 1.21407 0.92020 0.99449 0.96149 1.15801 0.89402 0.85575 1.18685 1.25039 0.91790 0.91801 0.91628 1.81139 1.08458 1.12313 1.12613 1.66410 1.41581 0.97420 1.06886 1.21746 0.92223 0.92110 1.14366 1.19885 0.99128 0.81170 0.70745 1.92935 1.96243 1.80625 1.49457 1.92950 1.93994 1.77063 1.54553 1.18498 0.91752 0.94366 0.88774 1.19261 1.14659 0.99968 1.14387 0.90351 1.26506 0.91032 0.94477 1.02063 1.69664 1.08703 1.28073 1.36363 0.86228 0.79919 0.82149 0.77937 1.20069 1.17341 1.15120 0.90632 0.92482 0.89621 0.82504 0.83806 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.38 8.59 71.23 0.61 -2.77 15 2 C -0.13 -5.03 4.20 -19.48 -0.08 -5.11 15 3 C -0.07 -2.33 9.40 22.33 0.21 -2.12 15 4 C 0.04 1.64 6.60 40.60 0.27 1.91 15 5 C 0.31 11.23 15.52 88.33 1.37 12.60 15 6 N -0.47 -17.35 18.54 19.00 0.35 -17.00 15 7 N -0.41 -16.63 10.15 -174.94 -1.78 -18.41 15 8 C -0.06 -2.44 6.35 43.38 0.28 -2.17 15 9 C 0.34 13.26 5.13 71.24 0.37 13.63 15 10 F -0.21 -8.66 16.23 44.97 0.73 -7.93 15 11 F -0.20 -8.49 16.34 44.97 0.73 -7.76 15 12 C 0.07 3.13 4.36 -21.16 -0.09 3.03 15 13 C -0.45 -21.58 7.26 23.42 0.17 -21.41 15 14 H 0.08 4.17 7.22 -2.91 -0.02 4.15 15 15 C 0.08 3.61 3.85 85.35 0.33 3.94 15 16 N -0.80 -37.37 13.92 21.87 0.30 -37.07 15 17 Si 0.92 35.34 25.23 68.60 1.73 37.07 15 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 19 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 20 H -0.23 -8.55 5.66 99.48 0.56 -7.99 15 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.06 2.09 3.35 -2.38 -0.01 2.08 15 23 H 0.09 2.24 8.10 -2.39 -0.02 2.22 15 24 H 0.16 4.16 8.06 -2.91 -0.02 4.13 15 25 H 0.14 4.42 8.11 -2.39 -0.02 4.40 15 26 H 0.30 12.48 8.29 -92.71 -0.77 11.71 15 Total: -1.00 -51.43 242.82 6.60 -44.83 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.10 Total: 4.73 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 3.43 Total: 1.53 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.12 Total: -72.47 kcal Atomic # 9 Polarization: -17.16 SS G_CDS: 1.46 Total: -15.69 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 1.73 Total: 37.07 kcal Total: -51.43 6.60 -44.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238484113.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.291 kcal (2) G-P(sol) polarization free energy of solvation -51.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds