Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 110.83837 * 2 1 4 4 H 1.08003 * 119.99373 * 5.39130 * 3 2 1 5 5 C 1.37874 * 120.00261 * 185.38377 * 3 2 1 6 6 N 1.31509 * 120.00357 * 185.01896 * 5 3 2 7 7 Si 1.86807 * 119.99908 * 5.02190 * 5 3 2 8 8 H 1.48498 * 109.46903 * 84.38042 * 7 5 3 9 9 H 1.48496 * 109.46851 * 204.38157 * 7 5 3 10 10 H 1.48503 * 109.46938 * 324.37811 * 7 5 3 11 11 C 1.54706 * 110.94477 * 123.72584 * 2 1 3 12 12 O 1.43765 * 102.79770 * 92.78448 * 11 2 1 13 13 C 1.36155 * 109.28000 * 27.55350 * 12 11 2 14 14 C 1.39289 * 129.85804 * 161.44585 * 13 12 11 15 15 C 1.37923 * 120.26318 * 179.57875 * 14 13 12 16 16 C 1.38389 * 120.33792 * 0.03659 * 15 14 13 17 17 Cl 1.73595 * 120.13570 * 180.17378 * 16 15 14 18 18 C 1.38453 * 119.73254 * 0.15940 * 16 15 14 19 19 C 1.37663 * 119.99884 * 0.02562 * 18 16 15 20 20 H 1.09004 * 109.47229 * 55.70594 * 1 2 3 21 21 H 1.08995 * 109.47584 * 175.70863 * 1 2 3 22 22 H 1.08999 * 109.47077 * 295.71191 * 1 2 3 23 23 H 0.96997 * 120.00528 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.75088 * 211.11191 * 11 2 1 25 25 H 1.09002 * 110.74362 * 334.46028 * 11 2 1 26 26 H 1.07998 * 119.86751 * 359.55682 * 14 13 12 27 27 H 1.08000 * 119.83594 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.01035 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0660 1.4084 0.0000 4 1 1.3878 2.2443 0.0879 5 6 3.4223 1.6299 -0.1120 6 7 3.8995 2.8513 -0.0130 7 14 4.5819 0.1949 -0.4045 8 1 4.6417 -0.1049 -1.8577 9 1 5.9390 0.5476 0.0844 10 1 4.0869 -0.9987 0.3273 11 6 2.0830 -0.8022 1.2017 12 8 2.2604 -2.1184 0.6513 13 6 2.4847 -2.0192 -0.6880 14 6 3.0406 -2.9422 -1.5707 15 6 3.1688 -2.6340 -2.9090 16 6 2.7474 -1.4055 -3.3868 17 17 2.9071 -1.0248 -5.0730 18 6 2.1976 -0.4813 -2.5147 19 6 2.0724 -0.7860 -1.1781 20 1 -0.3634 0.5790 -0.8490 21 1 -0.3634 -1.0247 -0.0769 22 1 -0.3633 0.4458 0.9259 23 1 4.8536 3.0072 -0.0922 24 1 3.0360 -0.3912 1.5346 25 1 1.3620 -0.8194 2.0190 26 1 3.3728 -3.9028 -1.2058 27 1 3.6004 -3.3550 -3.5874 28 1 1.8676 0.4789 -2.8828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238484689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = 1.547804 kcal Electronic energy + Delta-G solvation = -15300.598630 eV Core-core repulsion = 12729.506193 eV Total energy + Delta-G solvation = -2571.092437 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91173 -37.27322 -35.70326 -34.32458 -31.79084 -29.79388 -29.01742 -26.26472 -24.88400 -22.66725 -21.59202 -19.54706 -17.30242 -16.57054 -16.08292 -15.60095 -15.49486 -13.94670 -13.55518 -13.30665 -13.14219 -12.91514 -12.56817 -12.18403 -12.14372 -11.50425 -11.36435 -11.00583 -10.80466 -10.47656 -10.30250 -10.18024 -9.89932 -9.60259 -9.31772 -8.71877 -8.32778 -7.36255 -6.26659 -4.31638 1.64945 1.76699 2.55348 3.22389 3.27823 3.41044 3.89176 4.15576 4.33231 4.91260 5.21042 5.33955 5.63727 5.68918 5.71091 5.96548 6.01400 6.22443 6.28246 6.37321 6.49362 6.54789 6.66928 6.86391 6.87894 6.93242 7.06956 7.50492 7.73474 8.29246 8.75388 9.34469 10.83338 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.013125 C = 0.011301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.759992 B = 2132.798185 C = 2477.109022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.055 3.945 3 C -0.512 4.512 4 H 0.083 0.917 5 C 0.086 3.914 6 N -0.885 5.885 7 Si 0.838 3.162 8 H -0.261 1.261 9 H -0.296 1.296 10 H -0.239 1.239 11 C 0.042 3.958 12 O -0.313 6.313 13 C 0.118 3.882 14 C -0.154 4.154 15 C -0.087 4.087 16 C -0.074 4.074 17 Cl -0.086 7.086 18 C -0.042 4.042 19 C -0.140 4.140 20 H 0.055 0.945 21 H 0.036 0.964 22 H 0.055 0.945 23 H 0.267 0.733 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -9.294 -3.810 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.054 3.946 3 C -0.549 4.549 4 H 0.101 0.899 5 C -0.118 4.118 6 N -0.521 5.521 7 Si 0.665 3.335 8 H -0.186 1.186 9 H -0.223 1.223 10 H -0.164 1.164 11 C -0.032 4.032 12 O -0.227 6.227 13 C 0.072 3.928 14 C -0.173 4.173 15 C -0.106 4.106 16 C -0.101 4.101 17 Cl -0.058 7.058 18 C -0.061 4.061 19 C -0.141 4.141 20 H 0.074 0.926 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.333 -9.309 -3.800 10.322 hybrid contribution 0.959 -0.382 -0.358 1.093 sum -1.374 -9.691 -4.158 10.634 Atomic orbital electron populations 1.21570 0.94432 0.99547 1.01676 1.18806 0.93837 0.95665 0.86340 1.20683 0.92802 0.89144 1.52256 0.89923 1.24981 0.98056 0.95320 0.93452 1.69868 1.14030 1.20171 1.47992 0.87836 0.80425 0.84161 0.81064 1.18581 1.22336 1.16377 1.24680 1.01649 0.78746 0.98164 1.86700 1.86174 1.32209 1.17616 1.19628 0.93709 0.94475 0.84987 1.20022 1.05118 1.00375 0.91753 1.20506 1.00165 0.95332 0.94594 1.20574 1.08228 0.96524 0.84768 1.98310 1.96943 1.94670 1.15831 1.20116 0.96362 0.98535 0.91069 1.21370 1.01419 0.95595 0.95739 0.92561 0.94473 0.92612 0.92253 0.90262 0.88735 0.85444 0.85070 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 8.57 37.15 0.32 -1.85 15 2 C 0.05 1.20 0.83 -155.45 -0.13 1.07 15 3 C -0.51 -13.33 8.76 -34.44 -0.30 -13.63 15 4 H 0.08 2.32 8.03 -52.48 -0.42 1.90 15 5 C 0.09 2.37 5.33 -17.82 -0.09 2.27 15 6 N -0.89 -25.97 13.96 55.43 0.77 -25.19 15 7 Si 0.84 20.70 22.20 -169.99 -3.77 16.92 15 8 H -0.26 -6.49 6.04 56.52 0.34 -6.15 15 9 H -0.30 -7.55 7.11 56.52 0.40 -7.15 15 10 H -0.24 -5.60 3.23 56.52 0.18 -5.42 15 11 C 0.04 0.87 6.14 38.06 0.23 1.11 15 12 O -0.31 -6.55 10.66 -20.23 -0.22 -6.76 15 13 C 0.12 2.44 4.64 -38.92 -0.18 2.26 15 14 C -0.15 -2.76 10.02 -39.31 -0.39 -3.15 15 15 C -0.09 -1.48 9.81 -39.64 -0.39 -1.87 15 16 C -0.07 -1.38 5.99 -39.45 -0.24 -1.62 15 17 Cl -0.09 -1.41 28.97 -51.86 -1.50 -2.91 15 18 C -0.04 -0.87 8.01 -39.71 -0.32 -1.19 15 19 C -0.14 -3.02 2.57 -104.09 -0.27 -3.28 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 24 H 0.08 1.76 5.12 -51.93 -0.27 1.50 15 25 H 0.09 1.70 7.92 -51.93 -0.41 1.29 15 26 H 0.13 1.93 8.06 -52.49 -0.42 1.51 15 27 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 28 H 0.14 2.83 8.06 -52.48 -0.42 2.41 15 LS Contribution 240.79 15.07 3.63 3.63 Total: -1.00 -28.51 240.79 -5.90 -34.41 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.05 Total: -0.20 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.76 Total: -19.89 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.77 Total: -25.19 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.22 Total: -6.76 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -3.77 Total: 16.92 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.50 Total: -2.91 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.51 -5.90 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238484689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.955 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds