Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 110.83837 * 2 1 4 4 H 1.08003 * 119.99373 * 5.39130 * 3 2 1 5 5 C 1.37874 * 120.00261 * 185.38377 * 3 2 1 6 6 N 1.31509 * 120.00357 * 185.01896 * 5 3 2 7 7 Si 1.86807 * 119.99908 * 5.02190 * 5 3 2 8 8 H 1.48498 * 109.46903 * 84.38042 * 7 5 3 9 9 H 1.48496 * 109.46851 * 204.38157 * 7 5 3 10 10 H 1.48503 * 109.46938 * 324.37811 * 7 5 3 11 11 C 1.54706 * 110.94477 * 123.72584 * 2 1 3 12 12 O 1.43765 * 102.79770 * 92.78448 * 11 2 1 13 13 C 1.36155 * 109.28000 * 27.55350 * 12 11 2 14 14 C 1.39289 * 129.85804 * 161.44585 * 13 12 11 15 15 C 1.37923 * 120.26318 * 179.57875 * 14 13 12 16 16 C 1.38389 * 120.33792 * 0.03659 * 15 14 13 17 17 Cl 1.73595 * 120.13570 * 180.17378 * 16 15 14 18 18 C 1.38453 * 119.73254 * 0.15940 * 16 15 14 19 19 C 1.37663 * 119.99884 * 0.02562 * 18 16 15 20 20 H 1.09004 * 109.47229 * 55.70594 * 1 2 3 21 21 H 1.08995 * 109.47584 * 175.70863 * 1 2 3 22 22 H 1.08999 * 109.47077 * 295.71191 * 1 2 3 23 23 H 0.96997 * 120.00528 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.75088 * 211.11191 * 11 2 1 25 25 H 1.09002 * 110.74362 * 334.46028 * 11 2 1 26 26 H 1.07998 * 119.86751 * 359.55682 * 14 13 12 27 27 H 1.08000 * 119.83594 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.01035 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0660 1.4084 0.0000 4 1 1.3878 2.2443 0.0879 5 6 3.4223 1.6299 -0.1120 6 7 3.8995 2.8513 -0.0130 7 14 4.5819 0.1949 -0.4045 8 1 4.6417 -0.1049 -1.8577 9 1 5.9390 0.5476 0.0844 10 1 4.0869 -0.9987 0.3273 11 6 2.0830 -0.8022 1.2017 12 8 2.2604 -2.1184 0.6513 13 6 2.4847 -2.0192 -0.6880 14 6 3.0406 -2.9422 -1.5707 15 6 3.1688 -2.6340 -2.9090 16 6 2.7474 -1.4055 -3.3868 17 17 2.9071 -1.0248 -5.0730 18 6 2.1976 -0.4813 -2.5147 19 6 2.0724 -0.7860 -1.1781 20 1 -0.3634 0.5790 -0.8490 21 1 -0.3634 -1.0247 -0.0769 22 1 -0.3633 0.4458 0.9259 23 1 4.8536 3.0072 -0.0922 24 1 3.0360 -0.3912 1.5346 25 1 1.3620 -0.8194 2.0190 26 1 3.3728 -3.9028 -1.2058 27 1 3.6004 -3.3550 -3.5874 28 1 1.8676 0.4789 -2.8828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238484689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = -16.310826 kcal Electronic energy + Delta-G solvation = -15301.373039 eV Core-core repulsion = 12729.506193 eV Total energy + Delta-G solvation = -2571.866846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.48448 -38.73398 -37.09726 -36.09284 -33.75504 -31.28553 -30.51171 -27.93437 -26.79637 -24.16597 -23.08448 -21.28485 -19.10543 -18.20328 -17.70531 -17.28708 -16.98439 -15.78323 -15.15298 -14.92743 -14.75040 -14.62637 -14.16334 -13.77870 -13.59118 -13.11581 -13.02610 -12.56143 -12.26239 -12.20479 -12.13724 -11.88901 -11.52855 -11.23647 -11.17677 -10.78619 -9.85552 -8.90273 -8.39090 -6.45044 0.15539 0.28188 1.14587 1.26421 1.32976 1.37025 2.25464 2.36798 2.68916 2.91920 3.69976 3.89051 4.04464 4.19524 4.25698 4.34300 4.52599 4.71360 4.75430 4.88033 4.92467 5.03179 5.19495 5.33497 5.34595 5.39795 5.50285 5.62489 6.14322 6.23692 6.62605 7.23705 8.74208 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.013125 C = 0.011301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.759992 B = 2132.798185 C = 2477.109022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.045 3.955 3 C -0.502 4.502 4 H 0.048 0.952 5 C 0.040 3.960 6 N -0.935 5.935 7 Si 0.891 3.109 8 H -0.262 1.262 9 H -0.312 1.312 10 H -0.216 1.216 11 C 0.044 3.956 12 O -0.311 6.311 13 C 0.096 3.904 14 C -0.144 4.144 15 C -0.076 4.076 16 C -0.080 4.080 17 Cl -0.068 7.068 18 C -0.062 4.062 19 C -0.161 4.161 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.163 0.837 27 H 0.172 0.828 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -12.304 -4.444 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.044 3.956 3 C -0.539 4.539 4 H 0.067 0.933 5 C -0.160 4.160 6 N -0.573 5.573 7 Si 0.718 3.282 8 H -0.187 1.187 9 H -0.241 1.241 10 H -0.140 1.140 11 C -0.030 4.030 12 O -0.226 6.226 13 C 0.050 3.950 14 C -0.163 4.163 15 C -0.095 4.095 16 C -0.106 4.106 17 Cl -0.040 7.040 18 C -0.081 4.081 19 C -0.163 4.163 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.142 0.858 26 H 0.180 0.820 27 H 0.189 0.811 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.305 -12.343 -4.439 13.318 hybrid contribution 0.853 0.568 -0.263 1.058 sum -1.452 -11.775 -4.701 12.762 Atomic orbital electron populations 1.21523 0.92409 1.00752 1.02028 1.18854 0.95686 0.93357 0.87740 1.20892 0.92103 0.90762 1.50161 0.93327 1.25596 0.99640 0.96997 0.93746 1.69998 1.14116 1.22259 1.50962 0.86985 0.77690 0.82661 0.80829 1.18697 1.24070 1.13964 1.24559 1.01455 0.78770 0.98254 1.86700 1.86491 1.31509 1.17855 1.19939 0.95025 0.94921 0.85078 1.20502 1.03223 1.01021 0.91512 1.20992 0.98467 0.95059 0.94936 1.20764 1.07529 0.96790 0.85555 1.98318 1.96792 1.94686 1.14171 1.20143 0.97723 0.98726 0.91499 1.21259 1.02825 0.96411 0.95759 0.93161 0.92565 0.91595 0.92572 0.92049 0.85818 0.81953 0.81082 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.02 8.57 71.98 0.62 -3.40 15 2 C 0.04 1.93 0.83 -52.79 -0.04 1.88 15 3 C -0.50 -26.71 8.76 25.60 0.22 -26.48 15 4 H 0.05 2.85 8.03 -2.91 -0.02 2.83 15 5 C 0.04 2.22 5.33 84.65 0.45 2.67 15 6 N -0.93 -56.85 13.96 21.45 0.30 -56.55 15 7 Si 0.89 43.19 22.20 68.60 1.52 44.71 15 8 H -0.26 -12.57 6.04 99.48 0.60 -11.97 15 9 H -0.31 -15.73 7.11 99.48 0.71 -15.03 15 10 H -0.22 -9.61 3.23 99.48 0.32 -9.29 15 11 C 0.04 1.75 6.14 72.56 0.45 2.19 15 12 O -0.31 -12.04 10.66 -95.31 -1.02 -13.06 15 13 C 0.10 3.67 4.64 22.70 0.11 3.77 15 14 C -0.14 -4.49 10.02 22.45 0.22 -4.26 15 15 C -0.08 -2.24 9.81 22.23 0.22 -2.02 15 16 C -0.08 -2.74 5.99 22.36 0.13 -2.61 15 17 Cl -0.07 -2.07 28.97 -2.72 -0.08 -2.15 15 18 C -0.06 -2.50 8.01 22.18 0.18 -2.33 15 19 C -0.16 -6.70 2.57 -19.52 -0.05 -6.75 15 20 H 0.05 1.85 8.14 -2.38 -0.02 1.83 15 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 24 H 0.06 2.65 5.12 -2.39 -0.01 2.64 15 25 H 0.12 4.12 7.92 -2.39 -0.02 4.11 15 26 H 0.16 3.92 8.06 -2.91 -0.02 3.90 15 27 H 0.17 3.66 8.06 -2.91 -0.02 3.63 15 28 H 0.12 5.09 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -61.90 240.79 3.91 -58.00 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.67 Total: 6.37 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 2.50 Total: -37.33 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.30 Total: -56.55 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.02 Total: -13.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.52 Total: 44.71 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -61.90 3.91 -58.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238484689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.686 kcal (2) G-P(sol) polarization free energy of solvation -61.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds