Wall clock time and date at job start Mon Mar 30 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31552 * 119.63060 * 2 1 4 4 C 1.31860 * 122.16013 * 179.70523 * 3 2 1 5 5 C 1.50700 * 119.44458 * 180.27298 * 4 3 2 6 6 F 1.39893 * 109.47390 * 120.26882 * 5 4 3 7 7 F 1.39903 * 109.46853 * 240.26706 * 5 4 3 8 8 C 1.39955 * 121.11053 * 0.54164 * 4 3 2 9 9 C 1.43199 * 120.44294 * 179.75085 * 8 4 3 10 10 N 4.75530 * 140.38435 * 359.95078 * 3 1 2 11 11 C 1.39462 * 119.12134 * 359.47365 * 8 4 3 12 12 C 1.40777 * 119.63650 * 179.97438 * 2 1 3 13 13 C 1.41450 * 120.59027 * 359.97438 * 12 2 1 14 14 H 1.08000 * 119.99931 * 334.92959 * 13 12 2 15 15 C 1.39938 * 119.99894 * 154.93020 * 13 12 2 16 16 N 1.30827 * 120.00152 * 344.10504 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 164.09951 * 15 13 12 18 18 H 1.48504 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46895 * 120.00205 * 17 15 13 20 20 H 1.48502 * 109.47271 * 240.00369 * 17 15 13 21 21 H 1.08994 * 109.47454 * 270.02250 * 1 2 3 22 22 H 1.09001 * 109.47301 * 30.02286 * 1 2 3 23 23 H 1.09002 * 109.47253 * 150.01809 * 1 2 3 24 24 H 1.09006 * 109.47016 * 0.26468 * 5 4 3 25 25 H 1.07995 * 120.97453 * 180.27250 * 11 8 4 26 26 H 0.96999 * 119.99898 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1574 1.1435 0.0000 4 6 3.4747 1.2017 0.0057 5 6 4.1568 2.5455 0.0116 6 9 4.9559 2.6578 1.1544 7 9 4.9561 2.6676 -1.1301 8 6 4.2500 0.0365 0.0008 9 6 5.6798 0.1165 0.0018 10 7 6.8140 0.1800 0.0026 11 6 3.6118 -1.2034 0.0009 12 6 2.2031 -1.2236 0.0005 13 6 1.5007 -2.4514 0.0016 14 1 0.4974 -2.4991 0.3984 15 6 2.1059 -3.6042 -0.5113 16 7 3.1715 -3.5040 -1.2638 17 14 1.3924 -5.2860 -0.1216 18 1 0.1951 -5.1276 0.7425 19 1 1.0047 -5.9639 -1.3846 20 1 2.4100 -6.1033 0.5868 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 3.4049 3.3346 0.0149 25 1 4.1807 -2.1214 0.0016 26 1 3.5907 -4.3031 -1.6196 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238489827.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:56 Heat of formation + Delta-G solvation = -74.673880 kcal Electronic energy + Delta-G solvation = -16233.922332 eV Core-core repulsion = 13140.020745 eV Total energy + Delta-G solvation = -3093.901587 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.93130 -47.93680 -40.71165 -37.67865 -36.25624 -33.91039 -32.94135 -29.20934 -29.03773 -26.05277 -23.43977 -22.99997 -20.37632 -18.69668 -18.48743 -18.18921 -17.72870 -17.09412 -16.34946 -15.41601 -15.20055 -14.79641 -14.76547 -14.40376 -14.34294 -14.22888 -14.02131 -13.72645 -13.53150 -13.33542 -12.97002 -12.79593 -12.64271 -12.37198 -12.01099 -11.75111 -11.31302 -10.39259 -10.26479 -9.64801 -8.86568 -6.59441 -0.09088 0.67879 1.44213 1.48527 1.57021 1.61606 2.01994 2.15846 2.59400 2.74716 2.96774 3.32378 3.38106 3.78034 4.19969 4.29211 4.43884 4.67959 4.85270 5.01095 5.12593 5.13155 5.29594 5.40110 5.66718 5.74468 6.23171 6.40599 6.52368 6.57187 7.37142 8.06876 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.008268 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.855459 B = 3385.741753 C = 4043.656116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.023 3.977 3 N -0.433 5.433 4 C -0.073 4.073 5 C 0.332 3.668 6 F -0.213 7.213 7 F -0.214 7.214 8 C -0.045 4.045 9 C 0.279 3.721 10 N -0.458 5.458 11 C -0.106 4.106 12 C 0.049 3.951 13 C -0.428 4.428 14 H 0.116 0.884 15 C 0.033 3.967 16 N -0.803 5.803 17 Si 0.991 3.009 18 H -0.242 1.242 19 H -0.267 1.267 20 H -0.271 1.271 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.157 0.843 25 H 0.127 0.873 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 0.753 1.716 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 N -0.141 5.141 4 C -0.212 4.212 5 C 0.278 3.722 6 F -0.194 7.194 7 F -0.196 7.196 8 C -0.051 4.051 9 C -0.036 4.036 10 N -0.135 5.135 11 C -0.134 4.134 12 C 0.044 3.956 13 C -0.456 4.456 14 H 0.134 0.866 15 C -0.187 4.187 16 N -0.426 5.426 17 Si 0.810 3.190 18 H -0.165 1.165 19 H -0.191 1.191 20 H -0.196 1.196 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.174 0.826 25 H 0.144 0.856 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.838 1.531 1.559 5.309 hybrid contribution 0.607 -1.536 -0.115 1.655 sum -4.231 -0.005 1.443 4.470 Atomic orbital electron populations 1.20404 0.87088 1.02873 1.02514 1.21778 0.97571 0.86826 1.06138 1.66433 1.07077 1.30799 1.09830 1.20559 0.90544 0.92042 1.18084 1.20189 0.84658 0.97255 0.70114 1.92947 1.77288 1.97120 1.52048 1.92951 1.77324 1.97041 1.52282 1.16671 0.83921 0.96421 1.08077 1.25987 0.93050 0.92220 0.92294 1.81016 1.12491 1.09141 1.10855 1.21778 0.95538 0.94429 1.01615 1.18628 0.91470 0.94987 0.90534 1.20218 1.02557 0.91346 1.31470 0.86614 1.27053 0.94175 1.05930 0.91502 1.69800 1.17533 1.34473 1.20844 0.84982 0.79712 0.74816 0.79442 1.16473 1.19147 1.19608 0.90676 0.91217 0.90334 0.82616 0.85552 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 9.57 71.24 0.68 -1.61 15 2 C 0.02 0.95 6.85 43.22 0.30 1.24 15 3 N -0.43 -18.20 10.11 -169.02 -1.71 -19.91 15 4 C -0.07 -3.14 6.33 42.97 0.27 -2.87 15 5 C 0.33 12.36 5.12 71.24 0.36 12.73 15 6 F -0.21 -8.30 16.51 44.97 0.74 -7.56 15 7 F -0.21 -8.55 16.52 44.97 0.74 -7.81 15 8 C -0.04 -2.06 5.71 -21.32 -0.12 -2.18 15 9 C 0.28 12.94 13.16 88.33 1.16 14.10 15 10 N -0.46 -21.46 18.54 19.00 0.35 -21.11 15 11 C -0.11 -5.06 8.52 23.21 0.20 -4.86 15 12 C 0.05 2.22 5.58 -21.22 -0.12 2.11 15 13 C -0.43 -18.02 8.15 23.47 0.19 -17.83 15 14 H 0.12 4.33 6.85 -2.91 -0.02 4.31 15 15 C 0.03 1.34 5.20 85.25 0.44 1.78 15 16 N -0.80 -35.79 10.92 21.82 0.24 -35.55 15 17 Si 0.99 30.70 29.59 68.60 2.03 32.73 15 18 H -0.24 -6.99 7.11 99.48 0.71 -6.28 15 19 H -0.27 -8.12 7.11 99.48 0.71 -7.41 15 20 H -0.27 -8.51 7.11 99.48 0.71 -7.80 15 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.08 2.42 6.74 -2.39 -0.02 2.40 15 24 H 0.16 4.60 8.10 -2.38 -0.02 4.58 15 25 H 0.13 6.23 6.24 -2.91 -0.02 6.21 15 26 H 0.30 12.04 8.30 -92.71 -0.77 11.27 15 Total: -1.00 -52.19 250.20 7.00 -45.19 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.24 Total: 11.40 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 3.37 Total: 2.60 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.12 Total: -76.56 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 1.49 Total: -15.36 kcal Atomic # 14 Polarization: 30.70 SS G_CDS: 2.03 Total: 32.73 kcal Total: -52.19 7.00 -45.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238489827.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.485 kcal (2) G-P(sol) polarization free energy of solvation -52.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds