Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31885 * 119.44840 * 2 1 4 4 C 1.31527 * 122.16103 * 180.29039 * 3 2 1 5 5 C 1.50699 * 119.63175 * 179.70148 * 4 3 2 6 6 F 1.39902 * 109.47258 * 21.01272 * 5 4 3 7 7 F 1.39896 * 109.47327 * 141.01488 * 5 4 3 8 8 C 1.40810 * 120.73378 * 359.71754 * 4 3 2 9 9 C 1.41445 * 120.59556 * 179.97438 * 8 4 3 10 10 H 1.08000 * 120.00027 * 332.93731 * 9 8 4 11 11 C 1.39940 * 120.00376 * 152.93754 * 9 8 4 12 12 N 1.30829 * 119.99602 * 345.34222 * 11 9 8 13 13 Si 1.86796 * 120.00321 * 165.34403 * 11 9 8 14 14 H 1.48498 * 109.47544 * 89.99867 * 13 11 9 15 15 H 1.48503 * 109.47152 * 210.00299 * 13 11 9 16 16 H 1.48500 * 109.46961 * 329.99744 * 13 11 9 17 17 C 1.40841 * 118.81292 * 0.02562 * 8 4 3 18 18 C 1.39503 * 118.06238 * 359.97438 * 17 8 4 19 19 C 1.43192 * 120.44463 * 179.97438 * 18 17 8 20 20 N 3.49195 * 80.09020 * 179.74722 * 2 1 3 21 21 H 1.08996 * 109.47627 * 270.25738 * 1 2 3 22 22 H 1.09007 * 109.46919 * 30.25225 * 1 2 3 23 23 H 1.08999 * 109.47189 * 150.24784 * 1 2 3 24 24 H 1.09006 * 109.47018 * 261.01646 * 5 4 3 25 25 H 0.96999 * 119.99894 * 180.02562 * 12 11 9 26 26 H 1.08003 * 120.97404 * 179.97438 * 17 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1554 1.1485 0.0000 4 6 3.4691 1.2107 -0.0056 5 6 4.1514 2.5544 -0.0121 6 9 3.2666 3.5290 0.4619 7 9 5.2801 2.5083 0.8131 8 6 4.2452 0.0358 -0.0060 9 6 5.6579 0.1061 -0.0127 10 1 6.1539 0.9637 -0.4427 11 6 6.4130 -0.9354 0.5381 12 7 5.8379 -1.8253 1.3055 13 14 8.2419 -1.0551 0.1775 14 1 8.9997 -0.2955 1.2042 15 1 8.6601 -2.4797 0.2069 16 1 8.5201 -0.4853 -1.1653 17 6 3.5897 -1.2107 -0.0008 18 6 2.1947 -1.2186 0.0051 19 6 1.4761 -2.4571 0.0100 20 7 0.9060 -3.4398 0.0152 21 1 -0.3634 0.0046 1.0276 22 1 -0.3633 0.8878 -0.5178 23 1 -0.3633 -0.8922 -0.5100 24 1 4.4547 2.8030 -1.0292 25 1 6.3614 -2.5471 1.6875 26 1 4.1506 -2.1337 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238491762.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = -70.645327 kcal Electronic energy + Delta-G solvation = -16309.981472 eV Core-core repulsion = 13216.254576 eV Total energy + Delta-G solvation = -3093.726896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.60538 -47.63211 -40.73338 -37.63986 -36.24830 -33.72402 -32.98046 -29.90181 -28.28442 -26.10676 -23.50024 -22.87333 -20.29311 -18.58298 -18.19792 -18.16576 -17.64829 -17.01462 -16.31295 -15.46497 -15.00092 -14.84377 -14.50281 -14.23343 -14.18178 -14.07568 -13.89759 -13.62653 -13.51079 -13.31394 -13.04683 -12.95916 -12.72193 -12.32816 -12.07660 -11.62683 -11.23759 -10.39069 -10.21443 -9.61683 -8.82828 -6.54159 -0.11885 0.77267 1.44155 1.49365 1.58539 1.62219 1.99405 2.17875 2.66696 2.91785 3.11941 3.39520 3.48029 3.85761 4.14851 4.31638 4.42802 4.73196 4.81100 4.87913 4.91465 5.12258 5.13666 5.38022 5.60772 5.74383 6.19620 6.43913 6.50476 6.61226 7.39748 8.11997 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.011687 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.016719 B = 2395.157739 C = 3764.491477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.029 3.971 3 N -0.438 5.438 4 C -0.079 4.079 5 C 0.345 3.655 6 F -0.210 7.210 7 F -0.201 7.201 8 C 0.059 3.941 9 C -0.439 4.439 10 H 0.106 0.894 11 C 0.036 3.964 12 N -0.811 5.811 13 Si 0.986 3.014 14 H -0.264 1.264 15 H -0.270 1.270 16 H -0.247 1.247 17 C -0.082 4.082 18 C -0.060 4.060 19 C 0.294 3.706 20 N -0.463 5.463 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.144 0.856 25 H 0.297 0.703 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 3.838 -3.268 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 N -0.145 5.145 4 C -0.220 4.220 5 C 0.291 3.709 6 F -0.191 7.191 7 F -0.182 7.182 8 C 0.054 3.946 9 C -0.467 4.467 10 H 0.124 0.876 11 C -0.182 4.182 12 N -0.434 5.434 13 Si 0.806 3.194 14 H -0.189 1.189 15 H -0.194 1.194 16 H -0.170 1.170 17 C -0.111 4.111 18 C -0.066 4.066 19 C -0.021 4.021 20 N -0.140 5.140 21 H 0.088 0.912 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.161 0.839 25 H 0.108 0.892 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.342 2.911 -3.070 4.245 hybrid contribution 1.400 -0.716 0.356 1.612 sum 1.743 2.196 -2.714 3.902 Atomic orbital electron populations 1.20419 0.87785 1.02719 1.02478 1.20784 0.96743 0.85728 1.08290 1.66519 1.09436 1.28879 1.09690 1.21709 0.90134 0.94868 1.15294 1.19964 0.75443 0.82717 0.92763 1.92911 1.70390 1.64843 1.90997 1.92967 1.52353 1.96639 1.76262 1.18221 0.95136 0.90509 0.90752 1.20083 0.90264 1.05063 1.31260 0.87602 1.26886 1.06489 0.93136 0.91671 1.69767 1.41303 1.11628 1.20750 0.85103 0.75064 0.78683 0.80581 1.18867 1.19408 1.17018 1.21830 0.90680 0.99351 0.99252 1.16877 0.92984 0.87562 1.09136 1.25684 0.91920 0.92312 0.92143 1.81103 1.10559 1.11310 1.10987 0.91183 0.89982 0.91886 0.83901 0.89162 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.48 9.76 71.23 0.70 -1.79 15 2 C 0.03 1.18 6.83 42.96 0.29 1.47 15 3 N -0.44 -19.04 9.72 -169.02 -1.64 -20.69 15 4 C -0.08 -3.46 6.65 43.23 0.29 -3.17 15 5 C 0.35 13.06 5.19 71.24 0.37 13.43 15 6 F -0.21 -8.18 16.96 44.97 0.76 -7.42 15 7 F -0.20 -8.16 14.68 44.97 0.66 -7.50 15 8 C 0.06 2.73 5.53 -21.22 -0.12 2.61 15 9 C -0.44 -19.55 7.40 23.47 0.17 -19.38 15 10 H 0.11 4.37 6.54 -2.91 -0.02 4.35 15 11 C 0.04 1.56 5.21 85.25 0.44 2.00 15 12 N -0.81 -36.94 10.99 21.83 0.24 -36.70 15 13 Si 0.99 32.64 29.58 68.60 2.03 34.67 15 14 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 15 H -0.27 -8.69 7.11 99.48 0.71 -7.98 15 16 H -0.25 -7.78 7.11 99.48 0.71 -7.07 15 17 C -0.08 -3.78 8.51 23.21 0.20 -3.58 15 18 C -0.06 -2.54 5.74 -21.32 -0.12 -2.66 15 19 C 0.29 11.87 13.79 88.33 1.22 13.09 15 20 N -0.46 -18.86 18.54 19.00 0.35 -18.50 15 21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.08 2.42 8.14 -2.38 -0.02 2.40 15 23 H 0.06 1.92 7.05 -2.39 -0.02 1.91 15 24 H 0.14 4.25 8.14 -2.38 -0.02 4.23 15 25 H 0.30 12.30 8.30 -92.71 -0.77 11.53 15 26 H 0.13 6.13 6.35 -2.91 -0.02 6.11 15 Total: -1.00 -51.61 249.06 7.08 -44.53 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.24 Total: 9.59 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 3.44 Total: 2.02 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.05 Total: -75.89 kcal Atomic # 9 Polarization: -16.34 SS G_CDS: 1.42 Total: -14.92 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.67 kcal Total: -51.61 7.08 -44.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238491762.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.119 kcal (2) G-P(sol) polarization free energy of solvation -51.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds