Wall clock time and date at job start Mon Mar 30 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37973 * 120.45543 * 2 1 4 4 N 1.31724 * 121.17654 * 179.97438 * 3 2 1 5 5 C 1.32988 * 122.20743 * 359.97438 * 4 3 2 6 6 C 1.43207 * 119.62223 * 180.02562 * 5 4 3 7 7 N 4.70112 * 139.99515 * 359.96297 * 3 1 2 8 8 C 1.38970 * 120.75553 * 0.02562 * 5 4 3 9 9 C 1.50706 * 120.62804 * 180.02562 * 8 5 4 10 10 F 1.39901 * 109.46970 * 29.75835 * 9 8 5 11 11 F 1.39899 * 109.47220 * 149.75457 * 9 8 5 12 12 C 1.40972 * 118.75051 * 359.70231 * 8 5 4 13 13 C 1.41494 * 120.98877 * 180.26995 * 12 8 5 14 14 H 1.08006 * 120.00259 * 50.56486 * 13 12 8 15 15 C 1.40067 * 120.00155 * 230.56290 * 13 12 8 16 16 N 1.30721 * 119.99828 * 17.62013 * 15 13 12 17 17 Si 1.86798 * 120.00179 * 197.61875 * 15 13 12 18 18 H 1.48495 * 109.47147 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46801 * 120.00052 * 17 15 13 20 20 H 1.48498 * 109.47427 * 239.99801 * 17 15 13 21 21 H 1.08997 * 109.46626 * 87.87685 * 1 2 3 22 22 H 1.08995 * 109.47095 * 327.87519 * 1 2 3 23 23 H 1.08999 * 109.46805 * 207.87493 * 1 2 3 24 24 H 1.08006 * 119.41799 * 359.94945 * 3 2 1 25 25 H 1.08998 * 109.46975 * 269.75860 * 9 8 5 26 26 H 0.97002 * 120.00537 * 184.88787 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2064 1.1894 0.0000 4 7 3.5236 1.2059 0.0005 5 6 4.2465 0.0897 0.0015 6 6 5.6762 0.1723 0.0026 7 7 6.8102 0.2378 0.0020 8 6 3.6304 -1.1560 0.0016 9 6 4.4524 -2.4191 0.0034 10 9 5.6657 -2.1849 0.6593 11 9 3.7510 -3.4311 0.6675 12 6 2.2220 -1.2159 0.0070 13 6 1.5457 -2.4587 0.0130 14 1 1.8120 -3.2150 0.7366 15 6 0.5306 -2.7082 -0.9194 16 7 0.4327 -1.9684 -1.9926 17 14 -0.6831 -4.0982 -0.6292 18 1 -0.3588 -4.7796 0.6497 19 1 -2.0601 -3.5465 -0.5603 20 1 -0.5957 -5.0729 -1.7461 21 1 -0.3632 0.0381 -1.0270 22 1 -0.3633 0.8703 0.5465 23 1 -0.3633 -0.9084 0.4805 24 1 1.6643 2.1235 -0.0008 25 1 4.6482 -2.7266 -1.0239 26 1 -0.3110 -2.0944 -2.6025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238497070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:00 Heat of formation + Delta-G solvation = -45.644176 kcal Electronic energy + Delta-G solvation = -16691.241685 eV Core-core repulsion = 13598.598921 eV Total energy + Delta-G solvation = -3092.642764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.24295 -46.24468 -39.17355 -35.93009 -34.51239 -32.07029 -31.59013 -27.62546 -26.47689 -24.74889 -22.27067 -20.85689 -19.06223 -16.77010 -16.72028 -16.60819 -15.87823 -15.24816 -15.02998 -13.88441 -13.78677 -13.14343 -12.97107 -12.81773 -12.67236 -12.54256 -12.21780 -12.13739 -11.73616 -11.53677 -11.49094 -11.20566 -11.00958 -10.86366 -10.41634 -10.14912 -9.29556 -8.61870 -8.25705 -7.80810 -7.04466 -4.89163 1.55537 2.30333 2.92765 2.99185 3.04723 3.26717 3.67732 3.80102 4.34802 4.44436 4.56630 4.90407 5.04357 5.44540 5.72019 5.77583 6.12113 6.19345 6.28217 6.47788 6.64855 6.80493 6.97828 7.06276 7.44293 7.47895 8.06284 8.09307 8.29805 8.53055 8.81871 9.95382 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.010871 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.109482 B = 2575.155600 C = 3368.730802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.148 4.148 3 C 0.104 3.896 4 N -0.521 5.521 5 C 0.208 3.792 6 C 0.285 3.715 7 N -0.429 5.429 8 C -0.248 4.248 9 C 0.331 3.669 10 F -0.213 7.213 11 F -0.188 7.188 12 C 0.167 3.833 13 C -0.475 4.475 14 H 0.108 0.892 15 C 0.085 3.915 16 N -0.790 5.790 17 Si 0.902 3.098 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.274 1.274 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.141 0.859 25 H 0.108 0.892 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -0.986 0.865 3.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.152 4.152 3 C -0.049 4.049 4 N -0.235 5.235 5 C 0.070 3.930 6 C -0.031 4.031 7 N -0.108 5.108 8 C -0.257 4.257 9 C 0.277 3.723 10 F -0.195 7.195 11 F -0.170 7.170 12 C 0.159 3.841 13 C -0.506 4.506 14 H 0.126 0.874 15 C -0.133 4.133 16 N -0.416 5.416 17 Si 0.725 3.275 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.199 1.199 21 H 0.088 0.912 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.158 0.842 25 H 0.125 0.875 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.015 -0.072 0.651 1.208 hybrid contribution -1.513 -1.388 0.000 2.053 sum -2.528 -1.460 0.652 2.991 Atomic orbital electron populations 1.20519 0.91421 1.00587 1.01594 1.21174 0.96919 0.93022 1.04068 1.22049 0.88643 0.97160 0.97060 1.67369 1.08364 1.28334 1.19422 1.15718 0.85019 0.89827 1.02431 1.25358 0.92225 0.92109 0.93371 1.81047 1.11960 1.08968 1.08778 1.21454 0.96154 0.91941 1.16133 1.19920 0.75594 0.84873 0.91955 1.92946 1.47333 1.94732 1.84480 1.92938 1.78708 1.61877 1.83432 1.17308 0.87967 0.93906 0.84930 1.19888 1.15678 0.99889 1.15097 0.87409 1.25765 0.96773 0.97454 0.93341 1.69772 1.27606 1.36587 1.07666 0.86339 0.80049 0.81091 0.79976 1.18059 1.19494 1.19908 0.91179 0.94278 0.91544 0.84168 0.87453 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 8.39 36.01 0.30 -1.27 15 2 C -0.15 -3.11 5.62 -103.65 -0.58 -3.69 15 3 C 0.10 2.08 10.84 -17.69 -0.19 1.89 15 4 N -0.52 -11.25 10.25 -11.33 -0.12 -11.37 15 5 C 0.21 4.54 6.57 -85.17 -0.56 3.98 15 6 C 0.29 6.11 12.76 -22.47 -0.29 5.82 15 7 N -0.43 -9.26 18.37 41.84 0.77 -8.49 15 8 C -0.25 -5.44 5.84 -103.31 -0.60 -6.04 15 9 C 0.33 6.65 5.29 36.01 0.19 6.84 15 10 F -0.21 -4.38 14.54 2.25 0.03 -4.34 15 11 F -0.19 -3.92 13.91 2.25 0.03 -3.89 15 12 C 0.17 3.78 5.16 -106.56 -0.55 3.23 15 13 C -0.47 -10.73 6.83 -37.66 -0.26 -10.99 15 14 H 0.11 2.46 5.98 -52.48 -0.31 2.15 15 15 C 0.09 1.84 3.69 -17.34 -0.06 1.78 15 16 N -0.79 -17.53 11.19 55.55 0.62 -16.91 15 17 Si 0.90 16.60 29.60 -169.99 -5.03 11.57 15 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 21 H 0.07 1.35 7.08 -51.93 -0.37 0.98 15 22 H 0.04 0.61 8.11 -51.93 -0.42 0.19 15 23 H 0.07 1.28 6.44 -51.93 -0.33 0.95 15 24 H 0.14 2.34 8.06 -52.48 -0.42 1.91 15 25 H 0.11 1.93 8.14 -51.93 -0.42 1.50 15 26 H 0.28 5.79 8.30 -40.82 -0.34 5.45 15 LS Contribution 242.28 15.07 3.65 3.65 Total: -1.00 -24.56 242.28 -4.06 -28.62 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -1.42 Total: -0.39 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.60 Total: 1.55 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 1.27 Total: -36.77 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.06 Total: -8.23 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -24.56 -4.06 -28.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238497070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.024 kcal (2) G-P(sol) polarization free energy of solvation -24.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds