Wall clock time and date at job start Mon Mar 30 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37973 * 120.45543 * 2 1 4 4 N 1.31724 * 121.17654 * 179.97438 * 3 2 1 5 5 C 1.32988 * 122.20743 * 359.97438 * 4 3 2 6 6 C 1.43207 * 119.62223 * 180.02562 * 5 4 3 7 7 N 4.70112 * 139.99515 * 359.96297 * 3 1 2 8 8 C 1.38970 * 120.75553 * 0.02562 * 5 4 3 9 9 C 1.50706 * 120.62804 * 180.02562 * 8 5 4 10 10 F 1.39901 * 109.46970 * 29.75835 * 9 8 5 11 11 F 1.39899 * 109.47220 * 149.75457 * 9 8 5 12 12 C 1.40972 * 118.75051 * 359.70231 * 8 5 4 13 13 C 1.41494 * 120.98877 * 180.26995 * 12 8 5 14 14 H 1.08006 * 120.00259 * 50.56486 * 13 12 8 15 15 C 1.40067 * 120.00155 * 230.56290 * 13 12 8 16 16 N 1.30721 * 119.99828 * 17.62013 * 15 13 12 17 17 Si 1.86798 * 120.00179 * 197.61875 * 15 13 12 18 18 H 1.48495 * 109.47147 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46801 * 120.00052 * 17 15 13 20 20 H 1.48498 * 109.47427 * 239.99801 * 17 15 13 21 21 H 1.08997 * 109.46626 * 87.87685 * 1 2 3 22 22 H 1.08995 * 109.47095 * 327.87519 * 1 2 3 23 23 H 1.08999 * 109.46805 * 207.87493 * 1 2 3 24 24 H 1.08006 * 119.41799 * 359.94945 * 3 2 1 25 25 H 1.08998 * 109.46975 * 269.75860 * 9 8 5 26 26 H 0.97002 * 120.00537 * 184.88787 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2064 1.1894 0.0000 4 7 3.5236 1.2059 0.0005 5 6 4.2465 0.0897 0.0015 6 6 5.6762 0.1723 0.0026 7 7 6.8102 0.2378 0.0020 8 6 3.6304 -1.1560 0.0016 9 6 4.4524 -2.4191 0.0034 10 9 5.6657 -2.1849 0.6593 11 9 3.7510 -3.4311 0.6675 12 6 2.2220 -1.2159 0.0070 13 6 1.5457 -2.4587 0.0130 14 1 1.8120 -3.2150 0.7366 15 6 0.5306 -2.7082 -0.9194 16 7 0.4327 -1.9684 -1.9926 17 14 -0.6831 -4.0982 -0.6292 18 1 -0.3588 -4.7796 0.6497 19 1 -2.0601 -3.5465 -0.5603 20 1 -0.5957 -5.0729 -1.7461 21 1 -0.3632 0.0381 -1.0270 22 1 -0.3633 0.8703 0.5465 23 1 -0.3633 -0.9084 0.4805 24 1 1.6643 2.1235 -0.0008 25 1 4.6482 -2.7266 -1.0239 26 1 -0.3110 -2.0944 -2.6025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238497070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:59 Heat of formation + Delta-G solvation = -58.152469 kcal Electronic energy + Delta-G solvation = -16691.784085 eV Core-core repulsion = 13598.598921 eV Total energy + Delta-G solvation = -3093.185165 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.87058 -47.87730 -40.81007 -37.62104 -36.15602 -33.68516 -33.23482 -29.23431 -28.09726 -26.37163 -23.89586 -22.47631 -20.71415 -18.42860 -18.33261 -18.25238 -17.49491 -16.82972 -16.66381 -15.47112 -15.44643 -14.77535 -14.57792 -14.43621 -14.28951 -14.16627 -13.82331 -13.74471 -13.34250 -13.12448 -13.09703 -12.75206 -12.53843 -12.40743 -11.93328 -11.76145 -10.91045 -10.27136 -9.91874 -9.43451 -8.66530 -6.58542 -0.11484 0.66076 1.46698 1.50050 1.56861 1.61059 2.00803 2.28222 2.67945 2.79533 2.97098 3.27310 3.43679 3.82768 4.16245 4.22156 4.59007 4.62289 4.71258 4.86836 5.18337 5.23882 5.36521 5.50035 5.84917 5.88783 6.36509 6.40497 6.61979 6.86914 7.17475 8.35411 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.010871 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.109482 B = 2575.155600 C = 3368.730802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.158 4.158 3 C 0.105 3.895 4 N -0.530 5.530 5 C 0.197 3.803 6 C 0.290 3.710 7 N -0.435 5.435 8 C -0.259 4.259 9 C 0.330 3.670 10 F -0.216 7.216 11 F -0.194 7.194 12 C 0.144 3.856 13 C -0.493 4.493 14 H 0.098 0.902 15 C 0.062 3.938 16 N -0.813 5.813 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.259 1.259 20 H -0.275 1.275 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.177 0.823 25 H 0.131 0.869 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -0.778 0.803 4.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.162 4.162 3 C -0.048 4.048 4 N -0.244 5.244 5 C 0.059 3.941 6 C -0.026 4.026 7 N -0.113 5.113 8 C -0.268 4.268 9 C 0.276 3.724 10 F -0.198 7.198 11 F -0.175 7.175 12 C 0.136 3.864 13 C -0.524 4.524 14 H 0.116 0.884 15 C -0.155 4.155 16 N -0.440 5.440 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.184 1.184 20 H -0.200 1.200 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.194 0.806 25 H 0.148 0.852 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.993 0.142 0.590 2.084 hybrid contribution -1.189 -1.405 0.021 1.840 sum -3.182 -1.263 0.611 3.477 Atomic orbital electron populations 1.20476 0.89862 1.01567 1.01519 1.21508 0.98224 0.92890 1.03571 1.22579 0.88177 0.98330 0.95710 1.67421 1.09196 1.28267 1.19536 1.15802 0.85147 0.90063 1.03063 1.25333 0.92154 0.91906 0.93162 1.81041 1.12016 1.09207 1.09085 1.21674 0.96427 0.92638 1.16073 1.20081 0.75181 0.84293 0.92805 1.92936 1.47429 1.94740 1.84682 1.92924 1.78898 1.61993 1.83669 1.17633 0.88459 0.94797 0.85546 1.19915 1.16896 0.99933 1.15624 0.88387 1.26255 0.97485 0.99012 0.92717 1.69784 1.28291 1.37768 1.08123 0.85503 0.78652 0.78626 0.79250 1.18691 1.18371 1.20029 0.91756 0.91139 0.92533 0.80628 0.85239 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 8.39 71.24 0.60 -2.14 15 2 C -0.16 -6.42 5.62 -19.24 -0.11 -6.53 15 3 C 0.11 4.00 10.84 84.65 0.92 4.92 15 4 N -0.53 -22.18 10.25 -189.75 -1.94 -24.12 15 5 C 0.20 8.45 6.57 40.39 0.27 8.71 15 6 C 0.29 12.22 12.76 88.33 1.13 13.35 15 7 N -0.44 -18.41 18.37 19.01 0.35 -18.06 15 8 C -0.26 -11.26 5.84 -19.02 -0.11 -11.37 15 9 C 0.33 13.13 5.29 71.24 0.38 13.51 15 10 F -0.22 -8.75 14.54 44.97 0.65 -8.10 15 11 F -0.19 -8.04 13.91 44.97 0.63 -7.41 15 12 C 0.14 6.43 5.16 -21.12 -0.11 6.32 15 13 C -0.49 -22.10 6.83 23.52 0.16 -21.94 15 14 H 0.10 4.50 5.98 -2.91 -0.02 4.48 15 15 C 0.06 2.63 3.69 85.30 0.31 2.94 15 16 N -0.81 -35.26 11.19 21.84 0.24 -35.01 15 17 Si 0.96 33.17 29.60 68.60 2.03 35.20 15 18 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 19 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 20 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 21 H 0.06 2.36 7.08 -2.39 -0.02 2.35 15 22 H 0.07 2.01 8.11 -2.39 -0.02 1.99 15 23 H 0.06 2.10 6.44 -2.39 -0.02 2.09 15 24 H 0.18 5.27 8.06 -2.91 -0.02 5.24 15 25 H 0.13 4.55 8.14 -2.39 -0.02 4.53 15 26 H 0.29 11.52 8.30 -92.71 -0.77 10.75 15 Total: -1.00 -50.12 242.28 6.63 -43.49 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.24 Total: 6.24 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 3.43 Total: 7.78 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.35 Total: -77.19 kcal Atomic # 9 Polarization: -16.79 SS G_CDS: 1.28 Total: -15.51 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.03 Total: 35.20 kcal Total: -50.12 6.63 -43.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238497070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.667 kcal (2) G-P(sol) polarization free energy of solvation -50.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds