Wall clock time and date at job start Mon Mar 30 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31324 * 119.73931 * 2 1 4 4 C 1.32181 * 122.37973 * 180.29644 * 3 2 1 5 5 C 1.50699 * 119.24083 * 179.74052 * 4 3 2 6 6 F 1.39903 * 109.47061 * 119.97919 * 5 4 3 7 7 F 1.39903 * 109.46777 * 239.97760 * 5 4 3 8 8 C 1.38194 * 121.51522 * 359.71445 * 4 3 2 9 9 C 1.39668 * 119.24898 * 0.02562 * 8 4 3 10 10 C 1.43200 * 121.06756 * 179.97438 * 9 8 4 11 11 N 4.84969 * 136.12987 * 180.02562 * 2 1 3 12 12 C 1.40865 * 119.74023 * 179.74823 * 2 1 3 13 13 C 1.40764 * 120.76788 * 359.97438 * 12 2 1 14 14 H 1.07999 * 120.00417 * 317.18316 * 13 12 2 15 15 C 1.40286 * 119.99453 * 137.17648 * 13 12 2 16 16 N 1.30635 * 120.00627 * 338.86157 * 15 13 12 17 17 Si 1.86807 * 119.99764 * 158.86727 * 15 13 12 18 18 H 1.48498 * 109.47158 * 59.99610 * 17 15 13 19 19 H 1.48500 * 109.47141 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46886 * 299.99599 * 17 15 13 21 21 H 1.09003 * 109.46606 * 270.24737 * 1 2 3 22 22 H 1.08989 * 109.47063 * 30.24839 * 1 2 3 23 23 H 1.09001 * 109.47086 * 150.25315 * 1 2 3 24 24 H 1.08990 * 109.47226 * 359.97438 * 5 4 3 25 25 H 1.08000 * 120.37639 * 179.97438 * 8 4 3 26 26 H 0.96999 * 120.00584 * 185.38773 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1585 1.1403 0.0000 4 6 3.4789 1.2012 -0.0058 5 6 4.1536 2.5487 -0.0113 6 9 4.9566 2.6727 1.1276 7 9 4.9476 2.6678 -1.1570 8 6 4.2548 0.0576 -0.0063 9 6 3.6295 -1.1913 -0.0012 10 6 4.3955 -2.4012 -0.0021 11 7 5.0032 -3.3610 -0.0015 12 6 2.2058 -1.2231 0.0054 13 6 1.5128 -2.4483 0.0113 14 1 0.6501 -2.5777 0.6479 15 6 1.9429 -3.5013 -0.8099 16 7 2.6882 -3.2532 -1.8537 17 14 1.4497 -5.2583 -0.4108 18 1 -0.0308 -5.3726 -0.4266 19 1 2.0275 -6.1770 -1.4244 20 1 1.9599 -5.6220 0.9355 21 1 -0.3633 0.0044 1.0277 22 1 -0.3633 0.8877 -0.5176 23 1 -0.3633 -0.8923 -0.5099 24 1 3.3975 3.3336 -0.0101 25 1 5.3324 0.1288 -0.0115 26 1 2.9207 -3.9695 -2.4650 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238497209.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:58 Heat of formation + Delta-G solvation = -76.438604 kcal Electronic energy + Delta-G solvation = -16252.061524 eV Core-core repulsion = 13158.083413 eV Total energy + Delta-G solvation = -3093.978111 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.82082 -47.82231 -40.73785 -37.47564 -35.94112 -33.83172 -33.16857 -29.15928 -28.82736 -25.75543 -24.66423 -22.45563 -19.71676 -19.19109 -18.19121 -18.07617 -17.36732 -17.09369 -16.47147 -15.79901 -15.22451 -14.73318 -14.49158 -14.43013 -14.23217 -14.17491 -13.72585 -13.65151 -13.55820 -13.33628 -12.96318 -12.84664 -12.62653 -12.52071 -12.12463 -11.72968 -11.29797 -10.32262 -10.20062 -9.56219 -8.96849 -6.72275 0.18937 0.43625 1.28133 1.38230 1.40212 1.98965 2.01667 2.28433 2.60315 2.80217 3.26231 3.39436 3.44492 4.00120 4.07806 4.30341 4.42430 4.53711 4.85623 4.94203 4.97084 5.11330 5.33095 5.44775 5.45388 5.74918 6.18417 6.42848 6.49375 6.87546 7.34318 7.97341 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.008518 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.426214 B = 3286.246904 C = 3826.239036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.054 3.946 3 N -0.437 5.437 4 C -0.096 4.096 5 C 0.343 3.657 6 F -0.209 7.209 7 F -0.212 7.212 8 C -0.059 4.059 9 C -0.123 4.123 10 C 0.320 3.680 11 N -0.507 5.507 12 C 0.101 3.899 13 C -0.455 4.455 14 H 0.119 0.881 15 C 0.049 3.951 16 N -0.791 5.791 17 Si 0.958 3.042 18 H -0.231 1.231 19 H -0.279 1.279 20 H -0.269 1.269 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.151 0.849 25 H 0.123 0.877 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 5.445 2.009 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 N -0.146 5.146 4 C -0.227 4.227 5 C 0.289 3.711 6 F -0.191 7.191 7 F -0.193 7.193 8 C -0.081 4.081 9 C -0.133 4.133 10 C 0.009 3.991 11 N -0.186 5.186 12 C 0.093 3.907 13 C -0.484 4.484 14 H 0.137 0.863 15 C -0.172 4.172 16 N -0.413 5.413 17 Si 0.779 3.221 18 H -0.154 1.154 19 H -0.204 1.204 20 H -0.193 1.193 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.168 0.832 25 H 0.141 0.859 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.432 4.704 1.823 6.102 hybrid contribution 0.746 -1.399 -0.214 1.600 sum -2.686 3.305 1.609 4.553 Atomic orbital electron populations 1.20426 0.86787 1.03014 1.02766 1.21869 0.97618 0.86324 1.03782 1.66394 1.08435 1.30835 1.08971 1.20620 0.90566 0.93825 1.17685 1.19977 0.84650 0.96314 0.70160 1.92954 1.76956 1.96987 1.52188 1.92955 1.77464 1.97040 1.51855 1.21458 0.99920 0.91638 0.95103 1.16445 0.92788 0.86509 1.17539 1.25423 0.90632 0.92368 0.90651 1.80905 1.12847 1.11258 1.13587 1.18531 0.89753 0.95119 0.87276 1.19889 1.12862 0.94765 1.20834 0.86347 1.26706 0.92342 1.04795 0.93397 1.69624 1.25618 1.37418 1.08658 0.85542 0.81189 0.76363 0.79037 1.15391 1.20406 1.19347 0.90322 0.90892 0.90496 0.83224 0.85909 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 9.69 71.24 0.69 -1.64 15 2 C 0.05 2.23 6.86 43.28 0.30 2.53 15 3 N -0.44 -17.56 10.10 -170.21 -1.72 -19.28 15 4 C -0.10 -3.81 6.28 42.50 0.27 -3.54 15 5 C 0.34 11.12 5.53 71.24 0.39 11.52 15 6 F -0.21 -6.93 17.24 44.97 0.78 -6.15 15 7 F -0.21 -7.23 17.24 44.97 0.78 -6.45 15 8 C -0.06 -2.51 9.33 22.60 0.21 -2.30 15 9 C -0.12 -5.78 5.49 -20.65 -0.11 -5.89 15 10 C 0.32 15.83 11.71 88.33 1.03 16.87 15 11 N -0.51 -25.54 18.50 19.00 0.35 -25.18 15 12 C 0.10 4.60 5.32 -20.98 -0.11 4.49 15 13 C -0.46 -20.22 7.36 23.39 0.17 -20.05 15 14 H 0.12 4.72 7.69 -2.91 -0.02 4.70 15 15 C 0.05 2.22 4.08 85.37 0.35 2.57 15 16 N -0.79 -38.42 11.23 21.88 0.25 -38.18 15 17 Si 0.96 35.86 29.62 68.60 2.03 37.89 15 18 H -0.23 -7.61 7.11 99.48 0.71 -6.90 15 19 H -0.28 -10.61 7.11 99.48 0.71 -9.90 15 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.08 2.47 7.07 -2.39 -0.02 2.45 15 24 H 0.15 3.88 8.10 -2.39 -0.02 3.86 15 25 H 0.12 4.90 8.06 -2.91 -0.02 4.87 15 26 H 0.29 13.63 8.30 -92.71 -0.77 12.86 15 Total: -1.00 -53.27 252.40 6.88 -46.39 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.23 Total: 6.42 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 3.19 Total: 4.55 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.12 Total: -82.64 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 1.55 Total: -12.61 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -53.27 6.88 -46.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238497209.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.052 kcal (2) G-P(sol) polarization free energy of solvation -53.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds