Wall clock time and date at job start Mon Mar 30 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39021 * 120.09285 * 2 1 4 4 N 1.31586 * 121.53397 * 180.02562 * 3 2 1 5 5 C 1.32717 * 121.72439 * 0.02562 * 4 3 2 6 6 C 1.43203 * 119.99895 * 179.97438 * 5 4 3 7 7 N 4.69971 * 139.88893 * 0.05199 * 3 1 2 8 8 C 1.41956 * 119.99874 * 0.25077 * 5 4 3 9 9 C 1.40807 * 120.72783 * 179.72695 * 8 5 4 10 10 H 1.07997 * 119.99856 * 134.69905 * 9 8 5 11 11 C 1.40259 * 119.99981 * 314.70485 * 9 8 5 12 12 N 1.30638 * 119.99995 * 154.81081 * 11 9 8 13 13 Si 1.86804 * 119.99978 * 334.80855 * 11 9 8 14 14 H 1.48499 * 109.46778 * 94.68618 * 13 11 9 15 15 H 1.48496 * 109.47194 * 214.68715 * 13 11 9 16 16 H 1.48497 * 109.47021 * 334.69255 * 13 11 9 17 17 C 1.36826 * 120.09788 * 180.02562 * 2 1 3 18 18 C 1.50697 * 120.80650 * 359.95187 * 17 2 1 19 19 F 1.39897 * 109.47630 * 120.00272 * 18 17 2 20 20 F 1.39904 * 109.47489 * 240.00358 * 18 17 2 21 21 H 1.08997 * 109.47092 * 90.00441 * 1 2 3 22 22 H 1.08995 * 109.46500 * 209.99869 * 1 2 3 23 23 H 1.08998 * 109.47123 * 329.99932 * 1 2 3 24 24 H 1.08005 * 119.23242 * 359.97438 * 3 2 1 25 25 H 0.97010 * 120.00013 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47136 * 0.02562 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2028 0.0000 4 7 3.5195 1.2359 -0.0005 5 6 4.2455 0.1250 -0.0015 6 6 5.6754 0.2041 -0.0026 7 7 6.8096 0.2668 -0.0027 8 6 3.6047 -1.1417 -0.0075 9 6 4.3600 -2.3301 -0.0145 10 1 4.0950 -3.1421 0.6464 11 6 5.4564 -2.4591 -0.8795 12 7 6.4282 -3.2807 -0.5843 13 14 5.5271 -1.4562 -2.4539 14 1 6.3051 -0.2141 -2.2150 15 1 6.1838 -2.2543 -3.5202 16 1 4.1485 -1.1028 -2.8780 17 6 2.1932 -1.1838 -0.0005 18 6 1.4604 -2.5006 0.0000 19 9 1.8090 -3.2288 -1.1425 20 9 1.8106 -3.2288 1.1420 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6531 2.1318 -0.0004 25 1 7.1868 -3.3697 -1.1824 26 1 0.3857 -2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238497450.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:49 Heat of formation + Delta-G solvation = -43.458454 kcal Electronic energy + Delta-G solvation = -16814.309205 eV Core-core repulsion = 13721.761221 eV Total energy + Delta-G solvation = -3092.547984 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.17424 -46.15306 -39.31992 -35.74771 -34.13225 -33.41278 -31.68738 -27.59788 -26.80582 -25.03121 -22.01357 -21.18704 -18.40610 -17.75301 -17.08127 -16.43041 -15.54825 -15.48572 -14.80484 -13.85495 -13.74456 -13.37878 -13.15400 -13.02929 -12.94595 -12.54250 -12.40000 -12.17721 -11.96797 -11.77891 -11.52596 -11.34641 -11.03317 -10.56584 -10.38946 -10.31345 -9.43380 -8.87662 -8.64499 -7.92496 -7.32830 -4.97085 1.59322 2.09961 2.97598 3.02937 3.12217 3.69117 3.73153 3.78372 4.29371 4.44781 4.75697 4.84170 5.00064 5.33132 5.38857 5.45924 5.73317 5.83001 5.87179 6.01492 6.26913 6.42862 6.69482 6.85021 6.97977 7.36488 7.88821 7.99124 8.25616 8.56835 8.88357 9.64462 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.014005 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.062496 B = 1998.859552 C = 2661.908361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 C -0.023 4.023 4 N -0.407 5.407 5 C 0.040 3.960 6 C 0.301 3.699 7 N -0.452 5.452 8 C 0.097 3.903 9 C -0.420 4.420 10 H 0.115 0.885 11 C 0.094 3.906 12 N -0.753 5.753 13 Si 0.874 3.126 14 H -0.243 1.243 15 H -0.271 1.271 16 H -0.243 1.243 17 C -0.219 4.219 18 C 0.329 3.671 19 F -0.199 7.199 20 F -0.204 7.204 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.143 0.857 25 H 0.295 0.705 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 1.858 -1.353 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.051 4.051 3 C -0.186 4.186 4 N -0.115 5.115 5 C -0.101 4.101 6 C -0.012 4.012 7 N -0.132 5.132 8 C 0.089 3.911 9 C -0.446 4.446 10 H 0.133 0.867 11 C -0.133 4.133 12 N -0.373 5.373 13 Si 0.695 3.305 14 H -0.167 1.167 15 H -0.196 1.196 16 H -0.166 1.166 17 C -0.227 4.227 18 C 0.276 3.724 19 F -0.180 7.180 20 F -0.186 7.186 21 H 0.092 0.908 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.160 0.840 25 H 0.106 0.894 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.576 2.529 -1.369 9.045 hybrid contribution -0.592 -0.690 -0.662 1.125 sum -9.168 1.839 -2.031 9.569 Atomic orbital electron populations 1.20876 0.91687 1.02677 1.02410 1.20202 0.95883 0.93729 0.95295 1.21686 0.88680 0.95892 1.12371 1.66884 1.08084 1.31028 1.05505 1.16481 0.85371 0.89472 1.18743 1.24668 0.91846 0.92034 0.92695 1.81025 1.12030 1.08594 1.11543 1.17859 0.90798 0.92706 0.89692 1.19624 1.06558 1.00773 1.17639 0.86696 1.26195 0.92498 0.94369 1.00209 1.69604 1.04547 1.28116 1.35024 0.86905 0.81847 0.81370 0.80369 1.16717 1.19604 1.16601 1.20217 0.94355 0.93169 1.14995 1.20094 0.97326 0.83471 0.71538 1.92978 1.94332 1.79470 1.51203 1.92961 1.94237 1.79739 1.51626 0.90809 0.91705 0.90926 0.83969 0.89396 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.41 36.01 0.34 -1.06 15 2 C -0.05 -0.83 5.86 -104.84 -0.61 -1.45 15 3 C -0.02 -0.43 10.83 -17.37 -0.19 -0.62 15 4 N -0.41 -9.00 10.27 -10.40 -0.11 -9.11 15 5 C 0.04 0.96 5.61 -84.14 -0.47 0.49 15 6 C 0.30 7.63 10.54 -22.47 -0.24 7.39 15 7 N -0.45 -11.69 17.36 41.84 0.73 -10.97 15 8 C 0.10 2.31 4.58 -106.37 -0.49 1.83 15 9 C -0.42 -10.74 7.73 -37.85 -0.29 -11.03 15 10 H 0.12 3.08 6.93 -52.49 -0.36 2.72 15 11 C 0.09 2.41 4.45 -17.30 -0.08 2.33 15 12 N -0.75 -19.52 13.92 55.56 0.77 -18.75 15 13 Si 0.87 20.50 24.82 -169.99 -4.22 16.28 15 14 H -0.24 -5.91 5.47 56.52 0.31 -5.60 15 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 16 H -0.24 -5.68 7.11 56.52 0.40 -5.28 15 17 C -0.22 -4.45 5.41 -104.00 -0.56 -5.01 15 18 C 0.33 5.95 4.85 36.00 0.17 6.13 15 19 F -0.20 -4.01 16.65 2.25 0.04 -3.97 15 20 F -0.20 -4.04 15.97 2.25 0.04 -4.01 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.67 6.13 -51.93 -0.32 0.35 15 23 H 0.07 0.71 8.09 -51.93 -0.42 0.29 15 24 H 0.14 2.09 8.06 -52.48 -0.42 1.67 15 25 H 0.29 7.03 8.29 -40.82 -0.34 6.69 15 26 H 0.11 1.39 5.55 -51.93 -0.29 1.10 15 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -28.20 239.14 -3.03 -31.23 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: -1.46 Total: -3.32 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.42 Total: -0.99 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.39 Total: -38.82 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.22 Total: 16.28 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.20 -3.03 -31.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238497450.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.231 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds