Wall clock time and date at job start Mon Mar 30 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39021 * 120.09285 * 2 1 4 4 N 1.31586 * 121.53397 * 180.02562 * 3 2 1 5 5 C 1.32717 * 121.72439 * 0.02562 * 4 3 2 6 6 C 1.43203 * 119.99895 * 179.97438 * 5 4 3 7 7 N 4.69971 * 139.88893 * 0.05199 * 3 1 2 8 8 C 1.41956 * 119.99874 * 0.25077 * 5 4 3 9 9 C 1.40807 * 120.72783 * 179.72695 * 8 5 4 10 10 H 1.07997 * 119.99856 * 134.69905 * 9 8 5 11 11 C 1.40259 * 119.99981 * 314.70485 * 9 8 5 12 12 N 1.30638 * 119.99995 * 154.81081 * 11 9 8 13 13 Si 1.86804 * 119.99978 * 334.80855 * 11 9 8 14 14 H 1.48499 * 109.46778 * 94.68618 * 13 11 9 15 15 H 1.48496 * 109.47194 * 214.68715 * 13 11 9 16 16 H 1.48497 * 109.47021 * 334.69255 * 13 11 9 17 17 C 1.36826 * 120.09788 * 180.02562 * 2 1 3 18 18 C 1.50697 * 120.80650 * 359.95187 * 17 2 1 19 19 F 1.39897 * 109.47630 * 120.00272 * 18 17 2 20 20 F 1.39904 * 109.47489 * 240.00358 * 18 17 2 21 21 H 1.08997 * 109.47092 * 90.00441 * 1 2 3 22 22 H 1.08995 * 109.46500 * 209.99869 * 1 2 3 23 23 H 1.08998 * 109.47123 * 329.99932 * 1 2 3 24 24 H 1.08005 * 119.23242 * 359.97438 * 3 2 1 25 25 H 0.97010 * 120.00013 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47136 * 0.02562 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2028 0.0000 4 7 3.5195 1.2359 -0.0005 5 6 4.2455 0.1250 -0.0015 6 6 5.6754 0.2041 -0.0026 7 7 6.8096 0.2668 -0.0027 8 6 3.6047 -1.1417 -0.0075 9 6 4.3600 -2.3301 -0.0145 10 1 4.0950 -3.1421 0.6464 11 6 5.4564 -2.4591 -0.8795 12 7 6.4282 -3.2807 -0.5843 13 14 5.5271 -1.4562 -2.4539 14 1 6.3051 -0.2141 -2.2150 15 1 6.1838 -2.2543 -3.5202 16 1 4.1485 -1.1028 -2.8780 17 6 2.1932 -1.1838 -0.0005 18 6 1.4604 -2.5006 0.0000 19 9 1.8090 -3.2288 -1.1425 20 9 1.8106 -3.2288 1.1420 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6531 2.1318 -0.0004 25 1 7.1868 -3.3697 -1.1824 26 1 0.3857 -2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238497450.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:48 Heat of formation + Delta-G solvation = -62.448794 kcal Electronic energy + Delta-G solvation = -16815.132688 eV Core-core repulsion = 13721.761221 eV Total energy + Delta-G solvation = -3093.371467 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.65349 -47.65608 -40.97593 -37.60723 -35.95370 -34.93274 -33.39390 -28.97677 -28.41752 -26.61603 -23.58370 -22.82195 -20.15070 -19.45552 -18.57512 -17.92076 -17.31151 -17.11824 -16.43901 -15.51744 -15.28539 -15.17966 -14.77907 -14.54663 -14.37299 -14.05557 -13.89930 -13.79925 -13.67080 -13.26754 -13.14583 -12.98012 -12.64678 -12.24372 -12.16543 -11.86537 -11.29130 -10.52748 -10.25041 -9.57541 -9.19052 -6.84484 -0.07126 0.40617 1.12093 1.12566 1.24725 1.79033 1.88616 1.99068 2.41734 2.97628 3.13848 3.23937 3.45669 3.90657 4.13707 4.25508 4.35718 4.39183 4.62568 4.82315 4.98103 4.99522 5.28190 5.32103 5.40402 5.78671 5.98997 6.22316 6.40490 6.66534 7.22003 7.84396 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.014005 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.062496 B = 1998.859552 C = 2661.908361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.031 4.031 3 C 0.006 3.994 4 N -0.431 5.431 5 C 0.006 3.994 6 C 0.302 3.698 7 N -0.482 5.482 8 C 0.093 3.907 9 C -0.458 4.458 10 H 0.088 0.912 11 C 0.073 3.927 12 N -0.798 5.798 13 Si 0.904 3.096 14 H -0.260 1.260 15 H -0.256 1.256 16 H -0.241 1.241 17 C -0.229 4.229 18 C 0.321 3.679 19 F -0.214 7.214 20 F -0.218 7.218 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.194 0.806 25 H 0.297 0.703 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 3.733 -1.687 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.034 4.034 3 C -0.160 4.160 4 N -0.139 5.139 5 C -0.130 4.130 6 C -0.010 4.010 7 N -0.162 5.162 8 C 0.086 3.914 9 C -0.486 4.486 10 H 0.106 0.894 11 C -0.149 4.149 12 N -0.420 5.420 13 Si 0.724 3.276 14 H -0.185 1.185 15 H -0.180 1.180 16 H -0.164 1.164 17 C -0.238 4.238 18 C 0.269 3.731 19 F -0.195 7.195 20 F -0.200 7.200 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.123 0.877 24 H 0.210 0.790 25 H 0.108 0.892 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.670 4.383 -1.709 13.515 hybrid contribution 0.309 -1.006 -0.478 1.156 sum -12.360 3.377 -2.187 12.999 Atomic orbital electron populations 1.21092 0.86476 1.05300 1.04783 1.20878 0.99437 0.91791 0.91304 1.22811 0.87698 0.98516 1.06962 1.66966 1.09896 1.30231 1.06818 1.16536 0.84909 0.90319 1.21264 1.25151 0.92512 0.91317 0.92057 1.80983 1.12796 1.09469 1.12965 1.18098 0.92695 0.91905 0.88730 1.19416 1.08442 1.01148 1.19609 0.89425 1.26563 0.92326 0.94686 1.01366 1.69638 1.05494 1.30758 1.36124 0.86452 0.81517 0.80163 0.79433 1.18463 1.18030 1.16415 1.20742 0.93249 0.95918 1.13899 1.20780 0.99981 0.81921 0.70462 1.92948 1.94726 1.79779 1.52073 1.92935 1.94625 1.80005 1.52407 0.88162 0.89821 0.87749 0.78967 0.89179 0.81539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.41 71.24 0.67 -1.16 15 2 C -0.03 -0.90 5.86 -20.01 -0.12 -1.02 15 3 C 0.01 0.20 10.83 84.92 0.92 1.12 15 4 N -0.43 -17.96 10.27 -186.81 -1.92 -19.88 15 5 C 0.01 0.26 5.61 41.18 0.23 0.50 15 6 C 0.30 15.72 10.54 88.33 0.93 16.65 15 7 N -0.48 -25.84 17.36 19.00 0.33 -25.51 15 8 C 0.09 4.42 4.58 -21.00 -0.10 4.32 15 9 C -0.46 -24.36 7.73 23.39 0.18 -24.18 15 10 H 0.09 5.00 6.93 -2.91 -0.02 4.98 15 11 C 0.07 3.89 4.45 85.36 0.38 4.27 15 12 N -0.80 -43.77 13.92 21.88 0.30 -43.47 15 13 Si 0.90 43.04 24.82 68.60 1.70 44.74 15 14 H -0.26 -12.97 5.47 99.48 0.54 -12.42 15 15 H -0.26 -11.31 7.11 99.48 0.71 -10.61 15 16 H -0.24 -11.15 7.11 99.48 0.71 -10.45 15 17 C -0.23 -8.64 5.41 -19.46 -0.11 -8.74 15 18 C 0.32 10.65 4.85 71.23 0.35 11.00 15 19 F -0.21 -8.31 16.65 44.97 0.75 -7.56 15 20 F -0.22 -8.39 15.97 44.97 0.72 -7.67 15 21 H 0.10 1.21 8.14 -2.39 -0.02 1.19 15 22 H 0.08 1.05 6.13 -2.39 -0.01 1.04 15 23 H 0.10 1.08 8.09 -2.39 -0.02 1.06 15 24 H 0.19 4.13 8.06 -2.91 -0.02 4.10 15 25 H 0.30 15.05 8.29 -92.70 -0.77 14.28 15 26 H 0.17 3.43 5.55 -2.39 -0.01 3.42 15 Total: -1.00 -66.32 239.14 6.30 -60.02 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: 1.08 Total: -3.40 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 3.34 Total: 2.75 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -1.28 Total: -88.87 kcal Atomic # 9 Polarization: -16.70 SS G_CDS: 1.47 Total: -15.24 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.70 Total: 44.74 kcal Total: -66.32 6.30 -60.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238497450.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.432 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds