Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39075 * 119.31070 * 2 1 4 4 C 1.38402 * 119.73186 * 180.29782 * 3 2 1 5 5 C 1.50702 * 120.77516 * 179.71046 * 4 3 2 6 6 F 1.39897 * 109.46780 * 119.72663 * 5 4 3 7 7 F 1.39907 * 109.46789 * 239.72138 * 5 4 3 8 8 C 1.39891 * 118.44177 * 359.44408 * 4 3 2 9 9 C 1.43196 * 120.66584 * 180.24882 * 8 4 3 10 10 N 4.80401 * 135.35411 * 0.02978 * 3 1 2 11 11 C 1.41957 * 118.66317 * 0.26833 * 8 4 3 12 12 C 1.40859 * 119.94437 * 180.02562 * 11 8 4 13 13 H 1.08004 * 119.99582 * 353.49956 * 12 11 8 14 14 C 1.40287 * 119.99766 * 173.50017 * 12 11 8 15 15 N 1.30597 * 120.00428 * 6.23209 * 14 12 11 16 16 Si 1.86799 * 119.99648 * 186.22730 * 14 12 11 17 17 H 1.48494 * 109.47212 * 94.98964 * 16 14 12 18 18 H 1.48505 * 109.47249 * 214.98802 * 16 14 12 19 19 H 1.48502 * 109.47380 * 334.98574 * 16 14 12 20 20 N 1.31284 * 119.31121 * 179.73057 * 2 1 3 21 21 H 1.08992 * 109.47205 * 270.27234 * 1 2 3 22 22 H 1.09004 * 109.46961 * 30.27729 * 1 2 3 23 23 H 1.09008 * 109.46766 * 150.26877 * 1 2 3 24 24 H 1.07997 * 120.13070 * 0.02562 * 3 2 1 25 25 H 1.08989 * 109.47207 * 359.72433 * 5 4 3 26 26 H 0.96997 * 120.00234 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2127 0.0000 4 6 3.5718 1.2229 -0.0062 5 6 4.3333 2.5233 -0.0129 6 9 5.1384 2.5980 1.1287 7 9 5.1377 2.5867 -1.1559 8 6 4.2471 -0.0022 -0.0005 9 6 5.6783 -0.0472 -0.0012 10 7 6.8138 -0.0829 -0.0018 11 6 3.4849 -1.1998 0.0056 12 6 4.1372 -2.4483 0.0121 13 1 5.2109 -2.4971 -0.0936 14 6 3.3920 -3.6282 0.1557 15 7 2.0869 -3.5798 0.1611 16 14 4.2666 -5.2686 0.3390 17 1 4.4025 -5.5987 1.7804 18 1 3.4780 -6.3285 -0.3393 19 1 5.6144 -5.1828 -0.2785 20 7 2.1497 -1.1447 0.0054 21 1 -0.3633 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8925 -0.5097 24 1 1.6387 2.1427 0.0004 25 1 3.6302 3.3561 -0.0168 26 1 1.5717 -4.3957 0.2600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238498071.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = -53.701774 kcal Electronic energy + Delta-G solvation = -16293.852305 eV Core-core repulsion = 13200.860137 eV Total energy + Delta-G solvation = -3092.992168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.50433 -46.50159 -38.85127 -35.40299 -34.26682 -32.40198 -31.32064 -27.71104 -26.30830 -25.70002 -21.79492 -20.90115 -17.96150 -17.57795 -17.12927 -16.73053 -15.74674 -15.33177 -14.71922 -13.64380 -13.59606 -13.31647 -13.26403 -12.88840 -12.50100 -12.49392 -12.09769 -11.87715 -11.65410 -11.63910 -11.55075 -11.15847 -11.09411 -10.77734 -10.64448 -10.19267 -9.69816 -8.69024 -8.09741 -7.87070 -6.86105 -4.98754 1.85794 2.37047 2.92582 2.96834 2.98486 3.70355 3.84234 4.15174 4.21836 4.41089 4.61844 5.08648 5.20801 5.30286 5.59919 5.63076 5.91130 6.11327 6.27333 6.39699 6.50196 6.71716 6.79692 6.98916 7.10220 7.46462 7.83770 8.13272 8.43118 8.70835 9.60772 9.85150 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.009918 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.371465 B = 2822.343294 C = 3802.285875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.177 3.823 3 C -0.283 4.283 4 C -0.045 4.045 5 C 0.307 3.693 6 F -0.202 7.202 7 F -0.202 7.202 8 C -0.194 4.194 9 C 0.294 3.706 10 N -0.486 5.486 11 C 0.280 3.720 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.066 3.934 15 N -0.690 5.690 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.257 1.257 20 N -0.461 5.461 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 4.313 0.113 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 C -0.306 4.306 4 C -0.055 4.055 5 C 0.254 3.746 6 F -0.183 7.183 7 F -0.183 7.183 8 C -0.203 4.203 9 C -0.017 4.017 10 N -0.165 5.165 11 C 0.156 3.844 12 C -0.421 4.421 13 H 0.110 0.890 14 C -0.164 4.164 15 N -0.308 5.308 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.180 1.180 20 N -0.172 5.172 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.824 3.280 0.122 5.039 hybrid contribution 0.470 0.165 0.112 0.511 sum -3.354 3.445 0.234 4.813 Atomic orbital electron populations 1.20591 0.90644 1.02127 1.01875 1.21339 0.96153 0.88819 0.91336 1.20831 0.91779 0.98661 1.19369 1.20135 0.94454 0.91650 0.99226 1.20553 0.84532 0.98288 0.71247 1.92991 1.76399 1.97481 1.51469 1.92993 1.76441 1.97547 1.51364 1.16475 0.84659 0.94534 1.24652 1.25463 0.92477 0.92015 0.91746 1.80996 1.12427 1.09255 1.13780 1.18320 0.87304 0.90418 0.88308 1.19876 0.95467 0.89410 1.37317 0.89016 1.26210 0.94945 1.01748 0.93463 1.70010 1.06292 1.30271 1.24270 0.86160 0.80711 0.79616 0.79830 1.18851 1.19465 1.18009 1.68642 1.07839 1.24705 1.16059 0.91479 0.92132 0.90861 0.86891 0.86741 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.15 36.00 0.37 -1.14 15 2 C 0.18 3.63 6.79 -82.52 -0.56 3.07 15 3 C -0.28 -5.35 9.38 -39.21 -0.37 -5.72 15 4 C -0.04 -0.93 5.42 -103.94 -0.56 -1.49 15 5 C 0.31 5.51 5.06 36.01 0.18 5.69 15 6 F -0.20 -3.97 16.64 2.25 0.04 -3.93 15 7 F -0.20 -3.97 16.64 2.25 0.04 -3.93 15 8 C -0.19 -4.66 5.80 -105.93 -0.61 -5.27 15 9 C 0.29 7.29 12.02 -22.47 -0.27 7.02 15 10 N -0.49 -12.26 18.54 41.84 0.78 -11.48 15 11 C 0.28 7.10 6.57 -84.66 -0.56 6.54 15 12 C -0.39 -9.91 8.76 -37.82 -0.33 -10.24 15 13 H 0.09 2.32 6.91 -52.48 -0.36 1.96 15 14 C 0.07 1.53 5.49 -17.31 -0.10 1.44 15 15 N -0.69 -16.25 11.49 55.56 0.64 -15.62 15 16 Si 0.91 17.44 29.57 -169.99 -5.03 12.41 15 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 20 N -0.46 -11.19 7.78 -7.12 -0.06 -11.24 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.78 8.07 -51.93 -0.42 0.36 15 23 H 0.07 1.21 8.14 -51.92 -0.42 0.78 15 24 H 0.11 1.69 7.99 -52.49 -0.42 1.27 15 25 H 0.12 1.50 7.93 -51.93 -0.41 1.08 15 26 H 0.28 5.92 8.29 -40.82 -0.34 5.58 15 LS Contribution 252.90 15.07 3.81 3.81 Total: -1.00 -28.00 252.90 -4.18 -32.18 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -1.59 Total: -2.10 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.81 Total: -0.10 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.36 Total: -38.34 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.00 -4.18 -32.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498071.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.517 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds