Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39075 * 119.31070 * 2 1 4 4 C 1.38402 * 119.73186 * 180.29782 * 3 2 1 5 5 C 1.50702 * 120.77516 * 179.71046 * 4 3 2 6 6 F 1.39897 * 109.46780 * 119.72663 * 5 4 3 7 7 F 1.39907 * 109.46789 * 239.72138 * 5 4 3 8 8 C 1.39891 * 118.44177 * 359.44408 * 4 3 2 9 9 C 1.43196 * 120.66584 * 180.24882 * 8 4 3 10 10 N 4.80401 * 135.35411 * 0.02978 * 3 1 2 11 11 C 1.41957 * 118.66317 * 0.26833 * 8 4 3 12 12 C 1.40859 * 119.94437 * 180.02562 * 11 8 4 13 13 H 1.08004 * 119.99582 * 353.49956 * 12 11 8 14 14 C 1.40287 * 119.99766 * 173.50017 * 12 11 8 15 15 N 1.30597 * 120.00428 * 6.23209 * 14 12 11 16 16 Si 1.86799 * 119.99648 * 186.22730 * 14 12 11 17 17 H 1.48494 * 109.47212 * 94.98964 * 16 14 12 18 18 H 1.48505 * 109.47249 * 214.98802 * 16 14 12 19 19 H 1.48502 * 109.47380 * 334.98574 * 16 14 12 20 20 N 1.31284 * 119.31121 * 179.73057 * 2 1 3 21 21 H 1.08992 * 109.47205 * 270.27234 * 1 2 3 22 22 H 1.09004 * 109.46961 * 30.27729 * 1 2 3 23 23 H 1.09008 * 109.46766 * 150.26877 * 1 2 3 24 24 H 1.07997 * 120.13070 * 0.02562 * 3 2 1 25 25 H 1.08989 * 109.47207 * 359.72433 * 5 4 3 26 26 H 0.96997 * 120.00234 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2127 0.0000 4 6 3.5718 1.2229 -0.0062 5 6 4.3333 2.5233 -0.0129 6 9 5.1384 2.5980 1.1287 7 9 5.1377 2.5867 -1.1559 8 6 4.2471 -0.0022 -0.0005 9 6 5.6783 -0.0472 -0.0012 10 7 6.8138 -0.0829 -0.0018 11 6 3.4849 -1.1998 0.0056 12 6 4.1372 -2.4483 0.0121 13 1 5.2109 -2.4971 -0.0936 14 6 3.3920 -3.6282 0.1557 15 7 2.0869 -3.5798 0.1611 16 14 4.2666 -5.2686 0.3390 17 1 4.4025 -5.5987 1.7804 18 1 3.4780 -6.3285 -0.3393 19 1 5.6144 -5.1828 -0.2785 20 7 2.1497 -1.1447 0.0054 21 1 -0.3633 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8925 -0.5097 24 1 1.6387 2.1427 0.0004 25 1 3.6302 3.3561 -0.0168 26 1 1.5717 -4.3957 0.2600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238498071.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = -69.941883 kcal Electronic energy + Delta-G solvation = -16294.556529 eV Core-core repulsion = 13200.860137 eV Total energy + Delta-G solvation = -3093.696392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.96030 -47.97637 -40.53481 -37.28765 -35.98144 -34.01661 -32.99295 -29.27684 -28.02412 -27.15404 -23.50300 -22.46186 -19.66964 -19.30595 -18.60105 -18.19338 -17.33580 -16.93439 -16.38675 -15.26296 -15.16930 -14.91823 -14.80248 -14.37368 -14.18712 -14.08123 -13.70743 -13.59300 -13.30576 -13.27587 -13.14279 -12.63661 -12.62054 -12.36897 -12.14236 -11.82166 -11.34760 -10.38301 -9.79717 -9.57723 -8.56797 -6.80707 0.13820 0.74288 1.35246 1.44542 1.47664 1.93540 2.12927 2.34073 2.63358 2.82864 3.24215 3.48500 3.60700 3.73237 4.06812 4.12097 4.52251 4.67570 4.86047 4.94617 5.06331 5.11978 5.30477 5.40115 5.47077 5.87206 6.02532 6.37634 6.65133 6.83000 7.90691 8.16921 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.009918 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.371465 B = 2822.343294 C = 3802.285875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.163 3.837 3 C -0.257 4.257 4 C -0.053 4.053 5 C 0.304 3.696 6 F -0.215 7.215 7 F -0.215 7.215 8 C -0.236 4.236 9 C 0.299 3.701 10 N -0.514 5.514 11 C 0.262 3.738 12 C -0.433 4.433 13 H 0.074 0.926 14 C 0.033 3.967 15 N -0.715 5.715 16 Si 0.979 3.021 17 H -0.259 1.259 18 H -0.251 1.251 19 H -0.269 1.269 20 N -0.492 5.492 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.168 0.832 25 H 0.180 0.820 26 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 5.616 0.225 9.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.278 4.278 4 C -0.063 4.063 5 C 0.251 3.749 6 F -0.197 7.197 7 F -0.197 7.197 8 C -0.245 4.245 9 C -0.011 4.011 10 N -0.194 5.194 11 C 0.138 3.862 12 C -0.462 4.462 13 H 0.092 0.908 14 C -0.194 4.194 15 N -0.334 5.334 16 Si 0.798 3.202 17 H -0.183 1.183 18 H -0.174 1.174 19 H -0.193 1.193 20 N -0.204 5.204 21 H 0.101 0.899 22 H 0.118 0.882 23 H 0.080 0.920 24 H 0.186 0.814 25 H 0.197 0.803 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.879 4.604 0.233 7.471 hybrid contribution 0.947 -0.100 0.069 0.955 sum -4.932 4.504 0.302 6.686 Atomic orbital electron populations 1.20691 0.87118 1.03537 1.03302 1.22276 0.98555 0.88621 0.89533 1.21423 0.91112 1.00281 1.15028 1.20612 0.95631 0.91900 0.98190 1.21143 0.84749 0.98784 0.70226 1.92965 1.76974 1.97479 1.52241 1.92968 1.77015 1.97550 1.52130 1.16717 0.84213 0.95956 1.27641 1.25794 0.92871 0.91335 0.91101 1.80954 1.13025 1.10069 1.15342 1.18582 0.88288 0.90962 0.88331 1.19983 0.94988 0.91042 1.40219 0.90797 1.26858 0.95574 1.04107 0.92815 1.70010 1.07122 1.31681 1.24611 0.85232 0.79039 0.76007 0.79887 1.18330 1.17447 1.19323 1.68643 1.07367 1.27035 1.17357 0.89864 0.88173 0.92006 0.81413 0.80298 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.49 10.15 71.23 0.72 -1.77 15 2 C 0.16 6.27 6.79 42.84 0.29 6.56 15 3 C -0.26 -8.64 9.38 22.51 0.21 -8.42 15 4 C -0.05 -2.10 5.42 -19.42 -0.11 -2.21 15 5 C 0.30 9.98 5.06 71.24 0.36 10.34 15 6 F -0.22 -8.10 16.64 44.97 0.75 -7.36 15 7 F -0.22 -8.10 16.64 44.97 0.75 -7.35 15 8 C -0.24 -11.49 5.80 -20.71 -0.12 -11.61 15 9 C 0.30 15.28 12.02 88.33 1.06 16.34 15 10 N -0.51 -26.85 18.54 19.00 0.35 -26.50 15 11 C 0.26 13.63 6.57 40.43 0.27 13.89 15 12 C -0.43 -22.90 8.76 23.41 0.21 -22.69 15 13 H 0.07 4.00 6.91 -2.91 -0.02 3.98 15 14 C 0.03 1.59 5.49 85.37 0.47 2.06 15 15 N -0.72 -34.08 11.49 21.88 0.25 -33.83 15 16 Si 0.98 36.46 29.57 68.60 2.03 38.49 15 17 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 18 H -0.25 -8.48 7.11 99.48 0.71 -7.78 15 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 20 N -0.49 -23.82 7.78 -176.44 -1.37 -25.19 15 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.10 2.01 8.07 -2.39 -0.02 1.99 15 23 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 24 H 0.17 3.79 7.99 -2.91 -0.02 3.77 15 25 H 0.18 3.61 7.93 -2.39 -0.02 3.59 15 26 H 0.29 12.28 8.29 -92.71 -0.77 11.51 15 Total: -1.00 -63.95 252.90 7.35 -56.60 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.23 Total: 2.65 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 3.36 Total: 2.50 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -0.77 Total: -85.53 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 1.50 Total: -14.71 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -63.95 7.35 -56.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498071.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.342 kcal (2) G-P(sol) polarization free energy of solvation -63.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds