Wall clock time and date at job start Mon Mar 30 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 120.40105 * 2 1 4 4 C 1.38787 * 118.68770 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.27548 * 179.97438 * 4 3 2 6 6 F 1.39895 * 109.47159 * 209.99850 * 5 4 3 7 7 F 1.39898 * 109.47056 * 329.99831 * 5 4 3 8 8 C 1.39932 * 119.44319 * 0.02562 * 4 3 2 9 9 C 1.43196 * 119.61392 * 180.02562 * 8 4 3 10 10 N 4.80291 * 135.11524 * 0.02562 * 3 1 2 11 11 N 1.32362 * 120.76831 * 359.72315 * 8 4 3 12 12 C 1.33366 * 121.40696 * 0.56274 * 11 8 4 13 13 C 1.41444 * 119.75000 * 179.71182 * 12 11 8 14 14 H 1.08001 * 119.99435 * 179.73121 * 13 12 11 15 15 C 1.40023 * 120.00538 * 359.72673 * 13 12 11 16 16 N 1.30744 * 119.99474 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00166 * 180.27521 * 15 13 12 18 18 H 1.48497 * 109.47172 * 179.72808 * 17 15 13 19 19 H 1.48498 * 109.47241 * 299.72711 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72628 * 17 15 13 21 21 H 1.09002 * 109.46749 * 269.97618 * 1 2 3 22 22 H 1.09004 * 109.46995 * 29.97091 * 1 2 3 23 23 H 1.08999 * 109.47402 * 149.97107 * 1 2 3 24 24 H 1.07996 * 120.65758 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.46938 * 89.99992 * 5 4 3 26 26 H 0.97005 * 119.99633 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1920 0.0000 4 6 3.5936 1.1505 -0.0005 5 6 4.3920 2.4287 -0.0011 6 9 5.6076 2.2189 -0.6610 7 9 3.6699 3.4291 -0.6606 8 6 4.2447 -0.0881 -0.0016 9 6 5.6759 -0.1352 -0.0016 10 7 6.8114 -0.1724 -0.0015 11 7 3.5531 -1.2166 0.0034 12 6 2.2195 -1.2145 -0.0016 13 6 1.5156 -2.4413 -0.0022 14 1 0.4356 -2.4442 -0.0018 15 6 2.2189 -3.6521 -0.0033 16 7 3.5264 -3.6485 -0.0033 17 14 1.2893 -5.2723 -0.0118 18 1 2.2573 -6.3984 -0.0183 19 1 0.4362 -5.3599 1.2005 20 1 0.4353 -5.3466 -1.2244 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5143 24 1 1.6838 2.1371 0.0004 25 1 4.5848 2.7370 1.0264 26 1 4.0136 -4.4873 -0.0037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238498370.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:05 Heat of formation + Delta-G solvation = -45.886347 kcal Electronic energy + Delta-G solvation = -16251.261220 eV Core-core repulsion = 13158.607954 eV Total energy + Delta-G solvation = -3092.653266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.39725 -46.43113 -38.89536 -35.70932 -34.07124 -32.50940 -31.42599 -27.57822 -26.70198 -24.64281 -22.23113 -20.77976 -18.52858 -17.48863 -16.88739 -16.56600 -15.98966 -15.13835 -14.71822 -13.71916 -13.60244 -13.24379 -12.93516 -12.83764 -12.62189 -12.54202 -12.25068 -11.88609 -11.80149 -11.59573 -11.46066 -11.29182 -11.12795 -10.79974 -10.49691 -10.04928 -9.65049 -8.55183 -8.13846 -7.89671 -6.79712 -4.92059 1.78554 2.49334 2.92774 2.93259 2.94656 3.49920 3.70225 3.81392 4.40369 4.51173 4.62998 5.00040 5.30503 5.34071 5.64067 5.88291 6.03174 6.21262 6.37283 6.43180 6.45842 6.79565 6.85203 7.05414 7.25231 7.51451 7.80141 8.19216 8.29919 8.46259 9.50411 9.92282 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.008601 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.745124 B = 3254.780935 C = 4131.171988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.221 4.221 3 C -0.023 4.023 4 C -0.334 4.334 5 C 0.330 3.670 6 F -0.208 7.208 7 F -0.211 7.211 8 C 0.245 3.755 9 C 0.291 3.709 10 N -0.436 5.436 11 N -0.447 5.447 12 C 0.256 3.744 13 C -0.399 4.399 14 H 0.099 0.901 15 C 0.060 3.940 16 N -0.698 5.698 17 Si 0.915 3.085 18 H -0.275 1.275 19 H -0.261 1.261 20 H -0.261 1.261 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 3.805 1.322 6.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.227 4.227 3 C -0.046 4.046 4 C -0.344 4.344 5 C 0.275 3.725 6 F -0.189 7.189 7 F -0.192 7.192 8 C 0.095 3.905 9 C -0.025 4.025 10 N -0.114 5.114 11 N -0.161 5.161 12 C 0.133 3.867 13 C -0.428 4.428 14 H 0.117 0.883 15 C -0.168 4.168 16 N -0.318 5.318 17 Si 0.738 3.262 18 H -0.199 1.199 19 H -0.185 1.185 20 H -0.185 1.185 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.133 0.867 25 H 0.120 0.880 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.663 2.749 1.290 4.039 hybrid contribution -1.095 0.152 -0.137 1.114 sum -3.758 2.901 1.154 4.885 Atomic orbital electron populations 1.20411 0.92007 1.01173 1.00577 1.20638 0.95994 0.93315 1.12780 1.20373 0.91443 0.97354 0.95416 1.20224 0.95047 0.92128 1.27027 1.20086 0.76049 0.85107 0.91220 1.92957 1.46761 1.95074 1.84090 1.92918 1.78664 1.63512 1.84156 1.16233 0.85538 0.90098 0.98635 1.25459 0.92370 0.91448 0.93202 1.81005 1.12207 1.09635 1.08593 1.68830 1.08053 1.23209 1.15964 1.18399 0.86831 0.92087 0.89427 1.19914 0.95033 0.88917 1.38944 0.88282 1.26238 0.95052 1.01828 0.93666 1.70070 1.07388 1.29276 1.25032 0.86229 0.80070 0.79607 0.80256 1.19920 1.18520 1.18515 0.92972 0.93594 0.91658 0.86676 0.88004 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 9.51 36.01 0.34 -1.08 15 2 C -0.22 -4.62 5.96 -103.66 -0.62 -5.23 15 3 C -0.02 -0.45 9.17 -39.39 -0.36 -0.81 15 4 C -0.33 -6.90 5.80 -103.79 -0.60 -7.50 15 5 C 0.33 5.91 5.46 36.01 0.20 6.10 15 6 F -0.21 -4.15 14.52 2.25 0.03 -4.12 15 7 F -0.21 -3.72 16.54 2.25 0.04 -3.68 15 8 C 0.24 5.72 6.57 -85.08 -0.56 5.16 15 9 C 0.29 6.77 12.75 -22.47 -0.29 6.48 15 10 N -0.44 -10.16 18.36 41.84 0.77 -9.39 15 11 N -0.45 -11.39 7.77 -9.06 -0.07 -11.46 15 12 C 0.26 6.17 6.55 -85.01 -0.56 5.61 15 13 C -0.40 -9.21 8.68 -37.69 -0.33 -9.54 15 14 H 0.10 2.05 6.01 -52.49 -0.32 1.73 15 15 C 0.06 1.37 5.50 -17.35 -0.10 1.27 15 16 N -0.70 -17.13 11.46 55.55 0.64 -16.50 15 17 Si 0.92 16.57 29.56 -169.99 -5.02 11.54 15 18 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 19 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 20 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.68 8.09 -51.93 -0.42 0.26 15 23 H 0.06 1.09 6.33 -51.93 -0.33 0.76 15 24 H 0.12 1.95 7.67 -52.49 -0.40 1.54 15 25 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.28 6.33 8.29 -40.82 -0.34 5.99 15 LS Contribution 248.17 15.07 3.74 3.74 Total: -1.00 -26.47 248.17 -4.19 -30.67 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -1.45 Total: -1.26 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.87 Total: 0.46 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 1.33 Total: -37.35 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.02 Total: 11.54 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.47 -4.19 -30.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498370.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.218 kcal (2) G-P(sol) polarization free energy of solvation -26.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds