Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31590 * 119.67026 * 2 1 4 4 C 1.31987 * 123.17625 * 179.97438 * 3 2 1 5 5 C 1.50699 * 118.99983 * 179.97438 * 4 3 2 6 6 F 1.39902 * 109.47252 * 119.99915 * 5 4 3 7 7 F 1.39898 * 109.47704 * 240.00195 * 5 4 3 8 8 C 1.37591 * 122.00168 * 359.70748 * 4 3 2 9 9 C 1.41156 * 118.91260 * 0.58744 * 8 4 3 10 10 C 1.40931 * 121.36449 * 179.70793 * 9 8 4 11 11 H 1.07995 * 120.00534 * 204.52754 * 10 9 8 12 12 C 1.40325 * 119.99893 * 24.52437 * 10 9 8 13 13 N 1.30582 * 120.00157 * 201.80066 * 12 10 9 14 14 Si 1.86809 * 119.99932 * 21.80344 * 12 10 9 15 15 H 1.48500 * 109.46741 * 263.30230 * 14 12 10 16 16 H 1.48503 * 109.47081 * 23.29881 * 14 12 10 17 17 H 1.48494 * 109.47209 * 143.29842 * 14 12 10 18 18 C 1.39559 * 119.66685 * 180.02562 * 2 1 3 19 19 C 1.43204 * 121.01103 * 359.97438 * 18 2 1 20 20 N 3.49791 * 80.67638 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47086 * 269.98199 * 1 2 3 22 22 H 1.08999 * 109.46628 * 29.97681 * 1 2 3 23 23 H 1.08994 * 109.47453 * 149.98035 * 1 2 3 24 24 H 1.08998 * 109.47331 * 0.02562 * 5 4 3 25 25 H 1.07997 * 120.54286 * 180.30356 * 8 4 3 26 26 H 0.96999 * 120.00223 * 353.04727 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1434 0.0000 4 6 3.4758 1.2241 0.0005 5 6 4.1245 2.5843 -0.0001 6 9 4.9200 2.7222 1.1424 7 9 4.9209 2.7208 -1.1422 8 6 4.2750 0.1041 0.0070 9 6 3.6656 -1.1692 0.0007 10 6 4.4343 -2.3503 0.0008 11 1 4.0176 -3.2660 -0.3919 12 6 5.7414 -2.3367 0.5110 13 7 6.5941 -3.2562 0.1469 14 14 6.2616 -1.0031 1.7113 15 1 6.9557 0.0831 0.9740 16 1 5.0611 -0.4522 2.3899 17 1 7.1816 -1.5802 2.7242 18 6 2.1978 -1.2127 -0.0005 19 6 1.4965 -2.4612 -0.0006 20 7 0.9403 -3.4517 -0.0015 21 1 -0.3633 -0.0003 1.0277 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5141 24 1 3.3533 3.3546 -0.0005 25 1 5.3509 0.1975 0.0122 26 1 6.2986 -4.0045 -0.3949 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238498692.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = -66.861415 kcal Electronic energy + Delta-G solvation = -16295.278288 eV Core-core repulsion = 13201.715475 eV Total energy + Delta-G solvation = -3093.562813 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.58858 -46.58234 -39.08834 -35.63612 -34.80396 -32.52028 -31.72554 -27.74160 -26.64818 -25.77589 -21.71440 -21.13619 -18.72687 -17.91735 -16.93886 -16.82827 -16.55778 -15.55025 -14.34644 -14.06888 -13.83640 -13.51620 -13.46460 -13.00475 -12.97373 -12.51548 -12.39909 -12.27342 -11.97306 -11.86704 -11.71702 -11.29925 -11.19502 -10.70639 -10.49931 -9.97135 -9.67298 -8.80441 -8.56059 -8.16489 -7.88807 -5.30563 1.43237 2.26513 2.96341 3.09462 3.28576 3.59878 3.62939 3.72545 3.97708 4.19621 4.55780 4.85458 5.05368 5.12836 5.25919 5.51036 5.59894 5.98727 6.03869 6.14391 6.24243 6.44855 6.65278 6.90126 6.92786 7.18798 7.65503 7.77501 8.03004 8.47436 8.84945 9.36087 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.014947 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.661310 B = 1872.864087 C = 3285.555749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.217 3.783 3 N -0.566 5.566 4 C 0.092 3.908 5 C 0.320 3.680 6 F -0.201 7.201 7 F -0.200 7.200 8 C -0.243 4.243 9 C 0.134 3.866 10 C -0.450 4.450 11 H 0.091 0.909 12 C 0.043 3.957 13 N -0.759 5.759 14 Si 1.061 2.939 15 H -0.263 1.263 16 H -0.253 1.253 17 H -0.277 1.277 18 C -0.215 4.215 19 C 0.302 3.698 20 N -0.490 5.490 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 8.470 1.052 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.076 3.924 3 N -0.282 5.282 4 C -0.038 4.038 5 C 0.266 3.734 6 F -0.182 7.182 7 F -0.181 7.181 8 C -0.267 4.267 9 C 0.125 3.875 10 C -0.478 4.478 11 H 0.109 0.891 12 C -0.184 4.184 13 N -0.378 5.378 14 Si 0.884 3.116 15 H -0.189 1.189 16 H -0.177 1.177 17 H -0.204 1.204 18 C -0.224 4.224 19 C -0.009 4.009 20 N -0.169 5.169 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.966 8.209 1.807 8.633 hybrid contribution -0.266 -1.289 -1.067 1.695 sum -2.232 6.920 0.740 7.309 Atomic orbital electron populations 1.20688 0.89999 1.02643 1.02621 1.20548 0.94951 0.86620 0.90247 1.66504 1.07992 1.28365 1.25335 1.20623 0.90936 0.93106 0.99174 1.20211 0.85191 0.97070 0.70960 1.92978 1.76961 1.96833 1.51443 1.92984 1.76887 1.96864 1.51408 1.21588 0.99649 0.92364 1.13076 1.18593 0.89168 0.92548 0.87238 1.21009 0.98935 0.96946 1.30889 0.89103 1.27737 0.91625 1.02117 0.96949 1.70407 1.36061 1.08351 1.22933 0.83753 0.78267 0.73744 0.75845 1.18902 1.17668 1.20390 1.17588 0.92170 0.86723 1.25957 1.25334 0.91684 0.92270 0.91622 1.81065 1.10981 1.10831 1.14051 0.90704 0.90593 0.91601 0.85908 0.85961 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.79 36.01 0.35 -1.24 15 2 C 0.22 4.30 6.83 -82.20 -0.56 3.74 15 3 N -0.57 -11.31 10.04 -5.59 -0.06 -11.36 15 4 C 0.09 1.87 6.27 -82.76 -0.52 1.35 15 5 C 0.32 5.44 5.51 36.01 0.20 5.64 15 6 F -0.20 -3.53 17.23 2.25 0.04 -3.49 15 7 F -0.20 -3.52 17.24 2.25 0.04 -3.48 15 8 C -0.24 -5.39 6.83 -38.71 -0.26 -5.65 15 9 C 0.13 3.13 5.39 -104.29 -0.56 2.57 15 10 C -0.45 -10.92 9.02 -37.78 -0.34 -11.26 15 11 H 0.09 2.32 7.63 -52.49 -0.40 1.92 15 12 C 0.04 1.01 5.41 -17.30 -0.09 0.91 15 13 N -0.76 -18.05 13.64 55.57 0.76 -17.29 15 14 Si 1.06 21.87 24.91 -169.99 -4.23 17.63 15 15 H -0.26 -5.21 6.69 56.52 0.38 -4.83 15 16 H -0.25 -5.22 6.85 56.52 0.39 -4.83 15 17 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 18 C -0.21 -4.74 5.96 -104.00 -0.62 -5.36 15 19 C 0.30 6.71 12.97 -22.47 -0.29 6.42 15 20 N -0.49 -11.16 18.54 41.83 0.78 -10.39 15 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.07 1.02 7.10 -51.93 -0.37 0.65 15 24 H 0.12 1.67 8.09 -51.93 -0.42 1.25 15 25 H 0.12 2.68 4.47 -52.49 -0.23 2.44 15 26 H 0.30 6.85 8.73 -40.82 -0.36 6.50 15 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -25.13 248.52 -3.09 -28.23 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -1.46 Total: -0.71 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.70 Total: -2.88 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 1.48 Total: -39.04 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.08 Total: -6.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.23 Total: 17.63 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -25.13 -3.09 -28.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498692.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.635 kcal (2) G-P(sol) polarization free energy of solvation -25.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds